Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1295 ATGTCCCTTAATTCCGAAGCAAATCTTTCTTCCATGGAACCAACTTGTGTCGACACTTCTCTCAACCTTAACGTTATTCCCTCTTCACACACGGACATCGCGGGAGAAGTTTTGGTTGAAGAGTTGCGGCGTTTAAACTGCGAGAACAAGATGCTAACTGCGATGCTGAACCAAGTATACGAGAACTATGCTGCTTTGCAGAAACATCTGAGTGAGTTCAAGAGACTGAAGAATGCAAATTTTGACAAAGAAGAAACAGCATCGCTGAAAAGAAAGGTTGACAGTGAGAATTGCGCGAATCTGTTTTGCGTCAACGCCCTCACAGAGTGCAGCAGTGAGGAAGAGACGTTCAAAAAGCCTAAGCAAAGTACCACCCCAAAGGTTCACAAAGTTTTTGTACGGACAGATGCATCTGATACCAGCTTGTATGTGAGGGACGGATATCAGTGGAGAAAATATGGTCAAAAAGTGACCAGAGATAACCCTTCTCCTAGGGCTTACTTCAAGTGTTCCTATGCTCCGGGCTGTCCAGTGAAGAAGAAGGTGCAGAGAAGCGTGGAGGATCCAAGTTTGTTGGTGACAACGTACGAAGGAGAACACAATCATGGTGAACATCAAACGGAGATATCAGGGAATTCAGGGAAAAGTGAAAGTGGGGAAGCGCTAGAATTGGTCCAGTCAAGAGTGGTTGACATGAATGGGCAAAAGTCATTGATCCAGCAGTTTTTAGTTCAACAAATGGCTAATTCTTTGACCAGAGATCCTAATTTCACTGCAGCACTTGCTTCTGCCATCTCAGGAAATCTACATCATACTTCTACGCCAAAACGTTGA 834 0.4436 MSLNSEANLSSMEPTCVDTSLNLNVIPSSHTDIAGEVLVEELRRLNCENKMLTAMLNQVYENYAALQKHLSEFKRLKNANFDKEETASLKRKVDSENCANLFCVNALTECSSEEETFKKPKQSTTPKVHKVFVRTDASDTSLYVRDGYQWRKYGQKVTRDNPSPRAYFKCSYAPGCPVKKKVQRSVEDPSLLVTTYEGEHNHGEHQTEISGNSGKSESGEALELVQSRVVDMNGQKSLIQQFLVQQMANSLTRDPNFTAALASAISGNLHHTSTPKR* 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1295 277 Pfam WRKY DNA -binding domain 146 202 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vra5g1295 277 Gene3D WRKY domain 127 204 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vra5g1295 277 PANTHER TRANSCRIPTION FACTOR WRKY FAMILY-RELATED 12 273 - -
Vra5g1295 277 MobiDBLite consensus disorder prediction 197 220 - -
Vra5g1295 277 SMART WRKY_cls 144 204 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vra5g1295 277 ProSiteProfiles WRKY domain profile. 146 205 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vra5g1295 277 Coils Coil 42 62 - -
Vra5g1295 277 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 12 273 IPR044810 GO:0003700
Vra5g1295 277 SUPERFAMILY WRKY DNA-binding domain 141 203 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1295 Vra-Chr5 19884675 19886091 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g1295 17 271 WRKY Transcription Factor Family AT1G80840 44.637 2.26e-67 209
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vra5g1295 WRKY 1.4e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1295 - - gmx:100127373 366.696