Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1288 ATGGCAAACTGTCACCGGAATAGCGTTGGATCCATCGCTCTCGACCACCGACACACGGAGAAAAATGCCACTGCTGGCGGCCACTTCCGCGTGCTTCGCCGCTTGATCTTCGATGCCGTCAGCTGCGGCGGCACCTCCCGCTACCGCTATCGCCAACGTGGCGGCGGCGAAGGAAACGTTGCTGACTTCAGCTCCGTGACTAGCCATGCAGAGAAGGAGGAGAGGTCGGAGAAGAGGTCGGAGAAGCTGTCGGATCTGCTGAACGCGGCGGAGACGAAAACGGATGCGGAGGCGGAGAGGAAAGAGGAGGCATTGGCGGAGCTGAAGCGAGTGGTGAAGGAGTTGCGCGAAGAAGACCTCTCGATGCGGAGAATCGCGGCGGAGAGAGTGAGGTCACTGACGAAGGAAGATGCCGAAGCGAGAGCGAATCTCGCAATGCTCGGAGCAATTCCTCCTCTCGTCGGAATGCTCGATTCGGAAGACGCTCATTCGCAAATCGCTTCGCTCTATGCTTTGCTCAATCTCGGAATCGGCAACGATGCAAACAAAGCGACTATAGTGAAAATCGGCACTGTACACAAGATGCTGAAACTAATTGAATCGAGTGATTCAAATTCGTCGGTGGCCGAAGCGATTGTTGCGAATTTCCTTGGATTGAGTGCTTTGGATTCGAATAAACCGATAGTTGGTTCCTCCGGTGCAATACCGTTCCTTGTTTGCACCCTAACAAATTTAGAGGCTAGTAAAACCGTATCACCATCCCAATCGCAAGTGAAGCAAGATGCTCTGCGCGCTTTGTACAATCTTTCAATATGTCAGAGCAACCTTTCGGTTATTCTGGAGACTGATTTGGTTTGGTTTTTAGTGAGCGCGATAGGGGACATGGAAGTGAGCGAGAGGAGTCTGGCGATTCTGAGCAATTTAGTGTCGACTCCGGAGGGAAGAAAAGCGATCAGTGGTGTGAGCGATGCGATTCCGATTCTGGTGGATGTGTTGAGTTGGACGGATTCCCCAGAGTGCCAAGAGAAGGCGTCGTATGTGCTGATGATTATGGCACACAAAACTTACGGGGACAGGAGGGCCATGATCGAGGCAGGGATTGTGTCGTCGCTGCTTGAGTTGACGCTTGTCGGAACCACGTTAGCTCAGAAGAGAGCCTCCAGAATATTGGAGTGTTTGAGGGTGGACAAGGGGAAACAGGTTTCAGGGAGCTACGCTGCAAACTTGAATTTGGGTGTCTCTGCTCCTATTTGTGGTGGCTCTTCTTCCTCCGAGGGTGGTGGAGGGGGAAGAGGGTCCTTGGTGGAGGAGGAAGATGGAATGATGATGAGTGAGGAAAAGAAAGCAGTGAAACAGTTGGTGCAGCAAAGTCTGCAGAATAACATGATCAAAATCGTGAAGAGGGCCAACTTGCGTCGGGATTTCGTTCCATCTGCCAAAATTGCTTCACTCACTTCGAGTTCCACTTCCAAGAGCCTCCCATTTTGA 1488 0.5202 MANCHRNSVGSIALDHRHTEKNATAGGHFRVLRRLIFDAVSCGGTSRYRYRQRGGGEGNVADFSSVTSHAEKEERSEKRSEKLSDLLNAAETKTDAEAERKEEALAELKRVVKELREEDLSMRRIAAERVRSLTKEDAEARANLAMLGAIPPLVGMLDSEDAHSQIASLYALLNLGIGNDANKATIVKIGTVHKMLKLIESSDSNSSVAEAIVANFLGLSALDSNKPIVGSSGAIPFLVCTLTNLEASKTVSPSQSQVKQDALRALYNLSICQSNLSVILETDLVWFLVSAIGDMEVSERSLAILSNLVSTPEGRKAISGVSDAIPILVDVLSWTDSPECQEKASYVLMIMAHKTYGDRRAMIEAGIVSSLLELTLVGTTLAQKRASRILECLRVDKGKQVSGSYAANLNLGVSAPICGGSSSSEGGGGGRGSLVEEEDGMMMSEEKKAVKQLVQQSLQNNMIKIVKRANLRRDFVPSAKIASLTSSSTSKSLPF* 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1288 495 PANTHER ARMADILLO/BETA-CATENIN-LIKE REPEAT PROTEIN 1 495 - -
Vra5g1288 495 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 1 495 - -
Vra5g1288 495 Gene3D - 252 404 IPR011989 -
Vra5g1288 495 SUPERFAMILY ARM repeat 108 395 IPR016024 -
Vra5g1288 495 Coils Coil 73 118 - -
Vra5g1288 495 Gene3D - 78 251 IPR011989 -
Vra5g1288 495 MobiDBLite consensus disorder prediction 58 82 - -
Vra5g1288 495 MobiDBLite consensus disorder prediction 67 82 - -
Vra5g1288 495 SMART arm_5 179 221 IPR000225 GO:0005515
Vra5g1288 495 SMART arm_5 137 177 IPR000225 GO:0005515
Vra5g1288 495 SMART arm_5 222 271 IPR000225 GO:0005515
Vra5g1288 495 SMART arm_5 272 310 IPR000225 GO:0005515
Vra5g1288 495 SMART arm_5 311 353 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1288 Vra-Chr5 19755407 19757639 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g1288 99 400 U-box Gene Family AT1G67530 30.744 8.58e-30 121
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1288 - - gmx:100818576 707.983