Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1278 ATGAAAATGGACATATACGAGCCATTTCAGCAAGTTGGCATGTGGGGAGACGGCTTTAAAGTTGATGGTGGCCTGAACTCAATTGCTTCCCCGATATTAATGGTTGACACTAATGTCGAGACCAAGTCTGAATATATTCCTCAAGAATCAAGAGAGCCTTCTGGAGGCGATCAAGAGACCACAGACAAAGATGCTAATAAGATGAGAAGACGTCTAGCTCAGAATAGAGAGGCTGCTCGGAAAAGTCGGTTGAGGAAAAAGGCGTATGTTAAACAGTTAGAATCAAGCCGCATGAAGCTCGTGCAATTGGAGCTAGAAATTGGGAAAGCAAGAAAGCAGGGTCTGTACATGGGCACTGCATTAGATGCCAGCTATATAGGATCAACATCAGAAACAATAAACCCAGTTATTGTTGCATTTGAAATTGAATACGGACAATGGGTTGAAGAGCAACATAGGCGGAATGAAGAGCTTAGACATGCATTTCAAACTCAAGCACCCGAAGTTCAGCTTAATGTAGTGGTTCAGAGTGTCTTAAACCATTACTCAAATCTCTTCAGAATGAAAGCAGATGCTGCAAAGGCTGATGTTCTATATTTACTCTCTGGTGTGTGGAAAGCATCAGTGGAGCGCATCTTCCTTTGGATTGGAGGGTCCCGTCCATCACAGCTTCTAAACATTATCGTACCACAACTTGAGCCTTTGACTGATCAACAAATTGTTGGTATTAAAAATCTCCGCCAATCATCTCAGCAAGCTGAAGATGCTCTTTCACAGGGATTGGAAAAACTTCAGCAGAGTTTGGTCCTTGACATGGCAGTTGATCCATTGGGTGTAGGAAACTTCGGACTTCAGATGGCTCTTGCTATAGACAAATTTGAGGCACTAGAAGGTTTTGTGAGCCAGGCAGATCATCTTAGACAACAAACTCTGATTCACATGTCACGCATACTCTCAACTCATCAAGCTGCTCGTGGCTTGCTGGCTCTTGGGGAATACTTTCACCGTCTTCGCACTCTTTGCTCTCGTTGGGCTTCTCGTACATGCGAACTTCCCTAG 1059 0.4391 MKMDIYEPFQQVGMWGDGFKVDGGLNSIASPILMVDTNVETKSEYIPQESREPSGGDQETTDKDANKMRRRLAQNREAARKSRLRKKAYVKQLESSRMKLVQLELEIGKARKQGLYMGTALDASYIGSTSETINPVIVAFEIEYGQWVEEQHRRNEELRHAFQTQAPEVQLNVVVQSVLNHYSNLFRMKADAAKADVLYLLSGVWKASVERIFLWIGGSRPSQLLNIIVPQLEPLTDQQIVGIKNLRQSSQQAEDALSQGLEKLQQSLVLDMAVDPLGVGNFGLQMALAIDKFEALEGFVSQADHLRQQTLIHMSRILSTHQAARGLLALGEYFHRLRTLCSRWASRTCELP* 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1278 352 ProSiteProfiles DOG1 domain profile. 137 347 IPR025422 GO:0006351|GO:0043565
Vra5g1278 352 Pfam Seed dormancy control 156 229 IPR025422 GO:0006351|GO:0043565
Vra5g1278 352 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 70 85 IPR004827 GO:0003700|GO:0006355
Vra5g1278 352 PANTHER TRANSCRIPTION FACTOR TGA9 3 349 - -
Vra5g1278 352 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 65 100 IPR004827 GO:0003700|GO:0006355
Vra5g1278 352 Coils Coil 243 263 - -
Vra5g1278 352 SUPERFAMILY Leucine zipper domain 67 100 IPR046347 GO:0003700|GO:0006355
Vra5g1278 352 Pfam bZIP transcription factor 66 100 IPR004827 GO:0003700|GO:0006355
Vra5g1278 352 MobiDBLite consensus disorder prediction 43 67 - -
Vra5g1278 352 PANTHER FACTOR TGA7, PUTATIVE-RELATED 3 349 - -
Vra5g1278 352 Coils Coil 86 113 - -
Vra5g1278 352 Gene3D - 65 115 - -
Vra5g1278 352 SMART brlzneu 62 123 IPR004827 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1278 Vra-Chr5 19622815 19625932 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g1278 3 350 Calmodulin-binding Proteins AT1G22070 54.247 4.63e-130 375
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Vra5g1278 DOG1 8.8e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1278 K14431 - gmx:100794268 601.282