Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1277 ATGAGCAATCTGAGAACCCTTTGTAGACCTCAGACGCTGTTCTCTTTTATTAGTTGCAGACACCAATTTCGATCTATTTCGTTTCCAAACCCTAATTACAAGCCCCGTTTGTCGTCGCCGTTTCTGTACTCTACAATCGGTTCTTGGGGTTCGAATCCATGGTTTCGCGTGAATCAGAGGAGAACCGTAGCCAAGGCATCTAATTGGGCTGAACAAAAATCCCCATATGAAACTCTTGAATTGGAAGGAGATGCTGATGAAGACCAGATAAAAATTGCTTACAGACGCTTGGCCAAATTTTATCATCCAGATGTGTATGATGGCAGAGGTAACCTTGAAGAAGGTGAAACAGCAGAAGCTAGATTCATCAAGATTCAAGCTGCTTATGAATTGCTTATAGATGGAGAGAGGCGAAGACAGTATGATATTGATAACCGGGTCAACCCTATGAAGGCATCTCAGGCATGGATGGAGTGGCTTATAAAAAAGCGAAAAGCTTTTGATCAGCGGGGTGATATGGCAATTGCTGCTTGGGCTGAACAGCAACAGCGCGAGTTAAATCTTCGTGTGCGTCAACTTTCTCGTTCAAAGACTGATCCTGATGAAGTAAGGAGGATTCTGGCAAGAGAAAAGAAGGCATCGGCCGATTATTACTCAAATACCCTTAAAAGGCACACACTAGTACTAAAGAAGAGAGATTTGATGCGAAGAAAGGCCGAGGAAGAAAAGAAGAAGACTATCAGCCGTCTCTTGGCAGCAGAAGGTCTTGAACTTGATGATTCAGATAGTGATGAGGCACTCTAG 804 0.4353 MSNLRTLCRPQTLFSFISCRHQFRSISFPNPNYKPRLSSPFLYSTIGSWGSNPWFRVNQRRTVAKASNWAEQKSPYETLELEGDADEDQIKIAYRRLAKFYHPDVYDGRGNLEEGETAEARFIKIQAAYELLIDGERRRQYDIDNRVNPMKASQAWMEWLIKKRKAFDQRGDMAIAAWAEQQQRELNLRVRQLSRSKTDPDEVRRILAREKKASADYYSNTLKRHTLVLKKRDLMRRKAEEEKKKTISRLLAAEGLELDDSDSDEAL* 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1277 267 SMART dnaj_3 73 137 IPR001623 -
Vra5g1277 267 ProSiteProfiles dnaJ domain profile. 74 145 IPR001623 -
Vra5g1277 267 ProSitePatterns Nt-dnaJ domain signature. 122 141 IPR018253 -
Vra5g1277 267 Pfam DnaJ domain 75 142 IPR001623 -
Vra5g1277 267 SUPERFAMILY Chaperone J-domain 10 141 IPR036869 -
Vra5g1277 267 PRINTS DnaJ domain signature 76 94 IPR001623 -
Vra5g1277 267 PRINTS DnaJ domain signature 94 109 IPR001623 -
Vra5g1277 267 PRINTS DnaJ domain signature 117 137 IPR001623 -
Vra5g1277 267 PRINTS DnaJ domain signature 163 182 IPR001623 -
Vra5g1277 267 CDD DnaJ 75 134 IPR001623 -
Vra5g1277 267 PANTHER LD30543P 55 265 - -
Vra5g1277 267 Gene3D DnaJ domain 59 158 IPR036869 -
Vra5g1277 267 PANTHER CO-CHAPERONE PROTEIN DJLA 55 265 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1277 Vra-Chr5 19619491 19622477 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g1277 66 142 C2H2 Transcription Factor Family AT1G74250 37.662 6.49e-06 45.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1277 - - vra:106762321 516.153