Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1271 ATGCCACGACAATCGCCACCGTCACAGCCGCAGCAGCCCAGCAAACTGGACCCGGAGATATGGCAAGCCTGTGCTGGATCGTCTGTGAAAATCCCGAAGCCAAATTCTATGGTTTACTACTTTCCTCAGGGACACTTTGATCAAGCCTCTTCGGCACCCAAGAACCTCTCCCCTCATCTTCTGACCAACCCCTCGATTCCCTGCACTGTCGTCTCGGTTAATTTTCTTTCCGATCCTCTTACCGACGAGGTTTTCACCAAGATGGTTCTCCAACCTGTTGGTAATAATCTTTCTGCGGTATCCTTCAATACTCCTGCTCCTGCTCCTCCTCCTCCGCCAAATGACGACGACAAGGACAATGTCCTGTCCTTGTCGTTTGCCAAGATTCTCACGCCCTCTGATGCCAACAACGGCGGGGGCTTCTCCGTGCCTAGGTTCTGTGCGGACTCTGTCTTTCCCAAGCTGAACTTTGGCGCCGACCCGCCCGTGCAGAACCTCTTTGTCACCGACGTGCACGGCTTCACCTGGGAGTTCCGCCACATTTATCGTGGGACGCCGCGCCGCCACTTGCTCACCACTGGCTGGAGCACGTTCGTCAACAACAAGAAGCTGGTCGCTGGAGACTCTGTCTTGTTTATGAAGAGCCCCGAGGGACGTTTGTTTGTCGGAATTCGCCGCGCCACACCTTTCTCTTCCGAGAGGGTCAACTGTCCGAAGCTTTTAATTGAGGAGGAGGACAAAGAAGAAGAAGACGAAGAGAAGGTGACGAGGGTTTTCAAGAGGGACGGGAAGGGGAGGCTGCCAGCCAAGGCTGTTGTGGAGGCGGCGGAGTTGGCTGTGCGACAAATGCAATTTGAGGTTGCTTATTATCCGAAGGCTGGTTGGTTTGAGTTCGTGGTGAAGACTGAGGTGGTGGATGCAGCTATGAGTATTCAATGGAGGGCAGGAATGAGAGTGAAGATGTCTGCGGAGACAGACTATTCATCCAGGATGACGTGGTTTCAGGGTACCGTCTCTGCTGTCTCATCCCACGATAATGGCCAATGGTGCGGTTCGCCTTGGCGCATGCTTCAGGTTACATGGGATGAACCTGAAGGGCCGCGGAATGCAAACTGGGTTAGCCCTTGGCAGGTGGAACTTGTTTCCTCCCCACCTGTCCTTCATCCAGCATTCCCCCCAGCAAAAAGGCTCAGAACTGCTGATGGTTATGGGGTGTTGACTAATGGAGAGGGAGGAACCTTTTCTGTGGCCAGAGTCACTGATTCAGCTATGGTACATCTGAATCAGGCATATTTGAGTTATAGTACTTTTCCTGCTGGCATGCAGGGAGCCAGGCATGATGTATTTTCTGCATCAAGTTTTCCCAATTATCCAAGGGACATGTCTCATCCGTGTATCGATAATTCCTTTGGGAACAACACATTTTCAAGACAGACAAATTTGCCGACAGAACTACATGTTGGCGGCAACTCTCAATCTGATGAATTATCACCTGATAGTAGTTTCCATTCCTGTGTCACAGACACTCTTGGGAATAGCAACAACTTAATAAAACCTGCGCCCGATTCATTTCAGCTATTTGGTGCAGTCATTCGGAAAGAACAACCTGCTCAAAATGATTTAACAGGCACTGATAGCGCTAACACAGGAGATAAAGCCCTTGACAGATGA 1671 0.5093 MPRQSPPSQPQQPSKLDPEIWQACAGSSVKIPKPNSMVYYFPQGHFDQASSAPKNLSPHLLTNPSIPCTVVSVNFLSDPLTDEVFTKMVLQPVGNNLSAVSFNTPAPAPPPPPNDDDKDNVLSLSFAKILTPSDANNGGGFSVPRFCADSVFPKLNFGADPPVQNLFVTDVHGFTWEFRHIYRGTPRRHLLTTGWSTFVNNKKLVAGDSVLFMKSPEGRLFVGIRRATPFSSERVNCPKLLIEEEDKEEEDEEKVTRVFKRDGKGRLPAKAVVEAAELAVRQMQFEVAYYPKAGWFEFVVKTEVVDAAMSIQWRAGMRVKMSAETDYSSRMTWFQGTVSAVSSHDNGQWCGSPWRMLQVTWDEPEGPRNANWVSPWQVELVSSPPVLHPAFPPAKRLRTADGYGVLTNGEGGTFSVARVTDSAMVHLNQAYLSYSTFPAGMQGARHDVFSASSFPNYPRDMSHPCIDNSFGNNTFSRQTNLPTELHVGGNSQSDELSPDSSFHSCVTDTLGNSNNLIKPAPDSFQLFGAVIRKEQPAQNDLTGTDSANTGDKALDR* 557
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1271 556 CDD B3_DNA 125 226 IPR003340 GO:0003677
Vra5g1271 556 MobiDBLite consensus disorder prediction 537 556 - -
Vra5g1271 556 Pfam B3 DNA binding domain 126 227 IPR003340 GO:0003677
Vra5g1271 556 PANTHER AUXIN RESPONSE FACTOR 11 551 - -
Vra5g1271 556 ProSiteProfiles B3 DNA-binding domain profile. 126 228 IPR003340 GO:0003677
Vra5g1271 556 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 11 551 IPR044835 GO:0003677|GO:0006355|GO:0009725
Vra5g1271 556 MobiDBLite consensus disorder prediction 480 500 - -
Vra5g1271 556 Pfam Auxin response factor 275 358 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Vra5g1271 556 Gene3D - 124 228 IPR015300 -
Vra5g1271 556 SMART B3_2 126 228 IPR003340 GO:0003677
Vra5g1271 556 Gene3D - 313 384 - -
Vra5g1271 556 SUPERFAMILY DNA-binding pseudobarrel domain 124 232 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1271 Vra-Chr5 19541405 19545591 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g1271 15 547 B3 DNA Binding Superfamily AT1G77850 45.504 5.15e-147 434
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Vra5g1271 B3 5.7e-21 CL0405