Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1266 ATGCTCTGCTTCCTGTGTACCTTGTTGTTGCCGGCTATGACCGGGGGGCGATGTCTCCCGTTGAAGGACATGGCAGAGGAAGGGGATGCCGCTGCCGTGGGGAGGCCCTATCGGTCTGATTTTGTGGCGGAAATTACTCGTGATTTTTCCGTACGTGAAATTGATTACTTGTCCCAGGCTAGGAAAGCCCTCTCAGAACGTTCTCCCTTTGATGTTGCTGAAGAAACTTCGACTTCTGCTGCGCTGACGCTGCCCAGTGGGTTGGCTGGCCTGCTGAACAGACAGACTGATAACAGGAGACGTCCCAAGAAGTCTCATTCCGGTGGGCATAAGAGGAAATCTTCGACTAGGGCAAACCAGAAGAAACCTGAGGATTCTAACATTTGGATTGAGACTGAGGAGTACTTTAGAGACTTAACCTTGGCAGATATTGACTTCTTGTTTGAGTTCTCTCGCACTTCTAGTTTAGCTTCTCAGGACTTCTCCATTCCACTATTGGGAAATGTTCCGACATGCAATGCAGTTCGAAGTTATAGCGAGAATGAAATGGAGCCTGCTCCAAAAGTCAGCGTAGGAGTCAGTGGTGAGGATGAAAAGAAGGGTGATTTAGTGGTTAGTGAGGATGCAAAGAAGGTTGGTGAAGCTGTGGAAAGTGAGGATGGATTGTTGGTAATTGAGGCAATTGATGATGCTGCTGTTGAACAACCATGTCCTCAGGATGACAGGAATCAAGACAGTTCTGATTCTGCTATCAGCTTAGAATGGTTTTTGGGACGCAGGAATAAACTTTCTTTAACTTCCGAGCGTCCCTCCAAGAAAAGGAGGCTTTTGGGCGGTGAAGCTGGTTTGGAGAAAGTTATAATGTCTTGTCCTTGTGACGAGAGTCAACCGTTTTGCCATTACTGTGGCAGAGGAGACACTGGCAGTGACTCCAATAGGTTAATTGTATGCGCGGCTTGTAAAATGGCAGTTCACAGGAAGTGCTATGGTGTGCATGAGGGTGTGGATGAGGCTTGGCTGTGCTCCTGGTGCAAACAAATGGGTGATGTTGATGAATCAGTGAATCCTTGTGTTCTTTGTCCAAAGAAGGGTGGTGCATTGAAACCAGTTTATAGCAGTGTGAAAGGTGCTGGCTCAGCTGCATTTGTGCACTTATTCTGCTCTCTGTGGATGCCTGAGGTTTATATAGATGATATGGAGAAGATGGAACCTGTTATGAATGTGGGGGAAGTCAAGGAAACAAGGAAGAAATTAGTGTGTAGTGTTTGCAAATCAAAGTGTGGTGCATGTGTTCGGTGCAGCCATGGAAGCTGCAGAACTTCTTTCCACCCTTCATGTGCAAGGGATGCGAGACATAGGATGGAAGTTTGGGCAAAGTATGGCAATGATAATGTTGAGTTGCGGGCTTTTTGCTTGAAACACTCGGATCTACCAGAGAGCCAAAGCATCTTGCCACAGGAAGCCTTCATAGAGGTTAGAAATGAATTTTCAGAAGCCAGTGACCTTCCAGTGACATTGCCAGTGAGTGGTGAACACAACTTGAGAGATTGCAGGAATGGAGGATTAGTCTCTGACAGTAATCCAGACAAATTGAACCATAATGACGAACCACCAGATGGAGGATTACCTGAATGCAGGTTAAGTGATCACATGTTGGGATGTGGTGCTGTGCCCCAACAAAATGTTGAAGTGGTAGATAGAGGGAATGAGAATGCTGATGGATCTGATTCTAACAGTTTTGCTCTAGTTTTGAAGAAGTTGATTGATCGTGGAAAAGTTAACGTAAAAGATGTAGCATTGGAGATTGGCATTTCACCAGATACATTAACTGCAAATACAAATGAAGCTTATATGGCACCTGATGTCCGACACAAAATAGTGAATTGGCTAAAAGGCCATGTATATTCCGGTGCATTTCAGAAGGGTTTAAAGGTCAAATTCAAACCAGCCAATGCATCCAAAATTGATAGTGGAGCCACAGATGGCTCTGATACTTTACCAATATCAGACTCGGGTTTGCTGGATCCTGTTGCTGTTAAGTCGGTTCCACCAAGGAGGAGAACAACCAATAACATTAGGATTCTGAAGGATAATAAAGTGGTATGTTCATCTCAGGGGGTTACAAGTGAGAATGGGATGCCGGTACACATGTGCAGAGTAGGTCAGTCCAACTGCGAGAATCCAACAAGTTCCAATGAAGCATCCATCCCCAATGCAACAGAAACGAACTTATCCAAGCATGAGGATATTTTTCAAGAATTTCAAGAGAATGCTGATAAACCTCACAAATCCTGCTTATCTGGAAAGGGTGCAATCTCTAGTTACATTCATCCATTCATCAACAAGAAATTGCTGCAGATTCAGGATGGGGTGCCCTTGGAGAATGTTATATCAGGTTCAACTGACAAGGGAAATTCGGGTTTGGTTGAATCCTTTGGAGCTAGTGGCTGCTTAAATAGCCAAAATCAGAACTTAACTTCCAGTGAAATATCAAAGCCTGACGAAGTAAAGAGGGATCAATTGGTTAGGACTAAAAAAGTGGAAGTTTTGGAATTTTCTCCCCAAGATGAGTTGGAGGGGGAACTTGTTTATTTTCAATATAGGTTATTGCAGAATGTGGTTGCAAAAAGGAGGCATATTGATAATTTAATCTATAGTGTTGCAAAGAGTTTACCACATGAGATTGATAAGGCTCATCAACAAAGATGGGACGATGTTATTGTTAATCAATATCTACGTGATCTTAGAGAGGCAAAAAAGCAGGGCAGAAAAGAAAGAAAGCACAAGGAAGCACAGGCAGTATTGGCTGCTGCCACTGCTGCTGCTGCAGCATCTTCTAGGTCATTCCGGAAAGACACATTAGATGAATCTATGCAACAGGAGAATTTTTTAAAATCGGACCATTTAAATGGAAGGGCGGGTGCTTGTTCTCAACCGATGCCTCGAGCTAAAGAGACGCTTTCAAGAGTAGCTGTGACTAGAACTTCATCAGAGAAATATTCGGACTTTTGCATGCCAACCTCAGATTTTTCTAAGGAGCAATGTAAATCATGTGATATTTGTAGACGATCAGAGACTATTTTAAACCCTATCCTAGTCTGCTCTGGTTGTAAGGTTTCAGTCCACTTAGGTTGCTATCGTAGTGTGAAGGAAACGACAGGTCCGTGGTATTGTGAGTTATGTGAAGATTTTTCATCTAGAAGCTCTGGAGCATCTGCCATCAACTTTTGGGAGAAACCTTATATTGGTGTGAAATGTGCTCTCTGTGGTGGTACTACCGGTGCTTTTAGGAAGTCTTCTGATGGTCAATGGATTCATGCTTTCTGTGCTGAGTGGGTTTTTGAGTCTACATTCAGAAGAGGACAAATAGATGCTGTGGAAGGAATGGAAAGTGTGCCAAAAGGCATTGACACTTGTTGCATCTGCCATTGCAAGAATGGTGTATGCATGAAGTGTTGCTATGGGCATTGTCAGACCACATTCCACCCATCATGTGCTAGAAGTGCTGGTTTGTACATGAATGCAAGGACTGCTGGTGGCAAGGTTCAACACAAGGCTTACTGTGAAAAGCATAGTTTGGAGCAAAAAGCGAAGGCTGAAAATCAAAAACATGGAATTGAAGAGTTAAAAAGTATCAGGCAAATTAGGGTTGAACTAGAGAGATTACGTCTCCTTTGTGAAAGAATTGTCAAACGTGAAAAATTAAAGCGGGAATTAGTACTATGTTCACATGACATACTTGCCTTTAAGAGAGATAATGTTGCGAGGTCTGTGCTAGTTCATAGCCCTTTCATCCTTCCTGATGGTAGTTCAGAATCAGCTACAACGTCTCTAAAAGGGAACACAGAGGGATACAGATCATGCAGTGAACCTCCCCAAAGATCAGATGATGTTACTGTTGACAGTTCTGTTTCTGCTAAGCGCCGTGTCAGAGTTGCCATATCTATGGATGCAGACCCAAAATTGGATGATGACTGTTCAACCTCCCAGAGCAAATATAACCACAAGATTCCAGAAAGAACACAATTTTCTGGCAAGAAGATTCCTCACAGAGCTGCTGCATCACGAAATATTTTGGATGAAGGTGGATGGAGATCCAAATCTAGAAAGCATGCTGAAACATTTGGAAAAGAGCTTGTTATGACGTCAGATGAAGCGTCTATGAAGAATTCAAGGCTGCCAAAAGGATATGCATATGTTCCTGCTGATTGTCTGTCAAATGACAAGCACTCTAACGAGGATATGTATGCTAGTGGGCCTGTGGAGAATGACAGATAG 4278 0.4336 MLCFLCTLLLPAMTGGRCLPLKDMAEEGDAAAVGRPYRSDFVAEITRDFSVREIDYLSQARKALSERSPFDVAEETSTSAALTLPSGLAGLLNRQTDNRRRPKKSHSGGHKRKSSTRANQKKPEDSNIWIETEEYFRDLTLADIDFLFEFSRTSSLASQDFSIPLLGNVPTCNAVRSYSENEMEPAPKVSVGVSGEDEKKGDLVVSEDAKKVGEAVESEDGLLVIEAIDDAAVEQPCPQDDRNQDSSDSAISLEWFLGRRNKLSLTSERPSKKRRLLGGEAGLEKVIMSCPCDESQPFCHYCGRGDTGSDSNRLIVCAACKMAVHRKCYGVHEGVDEAWLCSWCKQMGDVDESVNPCVLCPKKGGALKPVYSSVKGAGSAAFVHLFCSLWMPEVYIDDMEKMEPVMNVGEVKETRKKLVCSVCKSKCGACVRCSHGSCRTSFHPSCARDARHRMEVWAKYGNDNVELRAFCLKHSDLPESQSILPQEAFIEVRNEFSEASDLPVTLPVSGEHNLRDCRNGGLVSDSNPDKLNHNDEPPDGGLPECRLSDHMLGCGAVPQQNVEVVDRGNENADGSDSNSFALVLKKLIDRGKVNVKDVALEIGISPDTLTANTNEAYMAPDVRHKIVNWLKGHVYSGAFQKGLKVKFKPANASKIDSGATDGSDTLPISDSGLLDPVAVKSVPPRRRTTNNIRILKDNKVVCSSQGVTSENGMPVHMCRVGQSNCENPTSSNEASIPNATETNLSKHEDIFQEFQENADKPHKSCLSGKGAISSYIHPFINKKLLQIQDGVPLENVISGSTDKGNSGLVESFGASGCLNSQNQNLTSSEISKPDEVKRDQLVRTKKVEVLEFSPQDELEGELVYFQYRLLQNVVAKRRHIDNLIYSVAKSLPHEIDKAHQQRWDDVIVNQYLRDLREAKKQGRKERKHKEAQAVLAAATAAAAASSRSFRKDTLDESMQQENFLKSDHLNGRAGACSQPMPRAKETLSRVAVTRTSSEKYSDFCMPTSDFSKEQCKSCDICRRSETILNPILVCSGCKVSVHLGCYRSVKETTGPWYCELCEDFSSRSSGASAINFWEKPYIGVKCALCGGTTGAFRKSSDGQWIHAFCAEWVFESTFRRGQIDAVEGMESVPKGIDTCCICHCKNGVCMKCCYGHCQTTFHPSCARSAGLYMNARTAGGKVQHKAYCEKHSLEQKAKAENQKHGIEELKSIRQIRVELERLRLLCERIVKREKLKRELVLCSHDILAFKRDNVARSVLVHSPFILPDGSSESATTSLKGNTEGYRSCSEPPQRSDDVTVDSSVSAKRRVRVAISMDADPKLDDDCSTSQSKYNHKIPERTQFSGKKIPHRAAASRNILDEGGWRSKSRKHAETFGKELVMTSDEASMKNSRLPKGYAYVPADCLSNDKHSNEDMYASGPVENDR* 1426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1266 1425 MobiDBLite consensus disorder prediction 517 542 - -
Vra5g1266 1425 Pfam PHD-finger 312 345 - -
Vra5g1266 1425 Pfam PHD-finger 1029 1062 - -
Vra5g1266 1425 Pfam PHD-zinc-finger like domain 1084 1191 - -
Vra5g1266 1425 Pfam PHD-zinc-finger like domain 356 474 - -
Vra5g1266 1425 MobiDBLite consensus disorder prediction 99 117 - -
Vra5g1266 1425 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1006 1066 IPR013083 -
Vra5g1266 1425 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 289 349 IPR013083 -
Vra5g1266 1425 ProSiteProfiles Zinc finger PHD-type profile. 296 347 IPR019787 -
Vra5g1266 1425 SUPERFAMILY FYVE/PHD zinc finger 288 345 IPR011011 -
Vra5g1266 1425 ProSiteProfiles Extended PHD (ePHD) domain profile. 354 475 IPR034732 -
Vra5g1266 1425 SMART PHD_3 419 475 IPR001965 -
Vra5g1266 1425 SMART PHD_3 1017 1062 IPR001965 -
Vra5g1266 1425 SMART PHD_3 298 345 IPR001965 -
Vra5g1266 1425 SMART PHD_3 1138 1192 IPR001965 -
Vra5g1266 1425 MobiDBLite consensus disorder prediction 1404 1425 - -
Vra5g1266 1425 PANTHER PHD FINGER PROTEINS 805 1414 - -
Vra5g1266 1425 PANTHER PHD FINGER PROTEINS 112 491 - -
Vra5g1266 1425 SUPERFAMILY FYVE/PHD zinc finger 1009 1062 IPR011011 -
Vra5g1266 1425 ProSiteProfiles Zinc finger PHD-type profile. 1015 1064 IPR019787 -
Vra5g1266 1425 PANTHER PHD-FINGER DOMAIN CONTAINING PROTEIN FAMILY-RELATED 112 491 - -
Vra5g1266 1425 PANTHER PHD-FINGER DOMAIN CONTAINING PROTEIN FAMILY-RELATED 805 1414 - -
Vra5g1266 1425 MobiDBLite consensus disorder prediction 1270 1302 - -
Vra5g1266 1425 Coils Coil 912 932 - -
Vra5g1266 1425 ProSiteProfiles Extended PHD (ePHD) domain profile. 1083 1192 IPR034732 -
Vra5g1266 1425 MobiDBLite consensus disorder prediction 92 124 - -
Vra5g1266 1425 MobiDBLite consensus disorder prediction 1270 1300 - -
Vra5g1266 1425 CDD ePHD 1086 1191 - -
Vra5g1266 1425 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 350 477 IPR013083 -
Vra5g1266 1425 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1082 1193 IPR013083 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g1266 293 481 C2H2 Transcription Factor Family AT3G14740 30.729 1.66e-17 84.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1266 - - vun:114164309 2656.71