Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1265 ATGCATCATCTATCTCGGATTTTTGAGCACCGCAACCGCACCAAAGCCATGGATCAGAAAAACCCGCGTAGGAAGCCCAAGCTCGAGCGCCGCAACGCTCTCAAGTACTCTGAATACGACTCTGGATCATCTACCTCCGGCGAAGCGCTCTACACGCGCTCCATGGAGTTCTACGACCGCACCAGCTTCCGAATCGAGGGCGTCGAGGGAGAGTTCGATCGAATTTGTAGGAGTTTGGGTCTCTCCGGCCCAGAAGACTTCTCTATTCCCGCTGCGGCCTGGGAAGCCATGAAGTTTCGTTCCTCTTCCGATATCCTCCCGAGACTGAAGCTCGAAAACCTCGATATTCCCGAGGAAGAGGAAGAGGACGAAGAAGAAGAAGTACGGAACATAAACGAGGAGGGAATACTAAAACCACCAGAGGATGGTGAATTTAGTGAAAAATTAGCAGATGGGGTTAGGGTTTTGGAGGCAGATGAGTCGACCACTGGTATTAAGGGTGTTCGTCCGCCGATGCTGAAGCCGCCGCCGGGGGTTAGAGTTCAGTTGGTGGATGATAGCTCGTGTTCCACGTGGGACCTTTTGAGGGATTTGGCTCCGATAGGTGAAGGGTTATCGTTGAAGCACTCTGAGCATACGAGGGATGTAGAGAACGATGCACCGCTAGGGGTAGTAGAGAGGGAGGTATCGAAGAAAGAAGAAGGGGAAGTGGGTAGAGCGAGCCCGAAGAGGGAAGAGGAAGAGAATGTGGATAACGCAGCGAGGATTGCGGAGATCGTGGCTGGGCTTTCGGAATCATGTTCGTTTTCCACGTCGAATGAAGATGATTCTTCTAGTAGTACAACGGATCACACCCCCAACAATATTTCTCCGCAAGGGAGAATCAAGCGGATTATTACCGCCGGAAGTTGGCAGAAGGGCGAGTTTCTTGGGGGTGGCTCGTTTGGCACCGTTTATGAAGGAATTTCTGATGATGGATTCTTTTTTGCTGTAAAAGAAGTTTCATTGCTTGATCAGGGGACTCAGGGAAAGCAAAGTGTATATCAGCTGGAGCAGGAAATAGCACTTTTGAGTCAGTTTGAGCATGAAAATATTGTTCAATATTATGGCACAGAAATGGATGAATCAAAGCTGTATATCTTTCTTGAGCTTGTAACCAAAGGTTCCCTTAGAAGCCTCTACCAAAAGTATACTCTTCGAGATTCCCAAGTATCTGCCTATACAAGACAGATTCTGCATGGTATGAAGTATCTTCATGATCGAAATGTGGTTCACAGGGATATCAAATGTGCAAATATATTGGTGGATGCAAGTGGATCTGTCAAGCTTGCAGATTTTGGATTGGCCAAGGCAACCAAAATGAATGACGTTAAATCAATGAAGGGTACAGCATTCTGGATGGCCCCGGAGGTTGTGAAAGGAAAGAACAAGGGATATGGGCTTCCAGCTGACATATGGAGTGTGGGATGCACTGTACTGGAGATGTTAACAGGCCAACTTCCGTACTGTGATTTGGAATGGATGCAGGCATTATTTAGAATTGGAAAAGGTATTCGACCATCTATTCCCGACTCCCTTTCGAGAGATGCCACCGATTTTATCTTGCAGTGCCTTCAAGTTAATCCAAATGATCGTCCCACCGCTGCTCAACTTCTAAACCATTCATTTGTCCAAAGGCCACTTTCCCAGACCTCTGGTTCTTCATTTCCTCATGTTCTTGGCCGGAAGGGTTAA 1734 0.4764 MHHLSRIFEHRNRTKAMDQKNPRRKPKLERRNALKYSEYDSGSSTSGEALYTRSMEFYDRTSFRIEGVEGEFDRICRSLGLSGPEDFSIPAAAWEAMKFRSSSDILPRLKLENLDIPEEEEEDEEEEVRNINEEGILKPPEDGEFSEKLADGVRVLEADESTTGIKGVRPPMLKPPPGVRVQLVDDSSCSTWDLLRDLAPIGEGLSLKHSEHTRDVENDAPLGVVEREVSKKEEGEVGRASPKREEEENVDNAARIAEIVAGLSESCSFSTSNEDDSSSSTTDHTPNNISPQGRIKRIITAGSWQKGEFLGGGSFGTVYEGISDDGFFFAVKEVSLLDQGTQGKQSVYQLEQEIALLSQFEHENIVQYYGTEMDESKLYIFLELVTKGSLRSLYQKYTLRDSQVSAYTRQILHGMKYLHDRNVVHRDIKCANILVDASGSVKLADFGLAKATKMNDVKSMKGTAFWMAPEVVKGKNKGYGLPADIWSVGCTVLEMLTGQLPYCDLEWMQALFRIGKGIRPSIPDSLSRDATDFILQCLQVNPNDRPTAAQLLNHSFVQRPLSQTSGSSFPHVLGRKG* 578
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1265 577 Gene3D Transferase(Phosphotransferase) domain 1 302 571 - -
Vra5g1265 577 PANTHER MAP KINASE KINASE KINASE-LIKE PROTEIN 58 570 - -
Vra5g1265 577 MobiDBLite consensus disorder prediction 1 47 - -
Vra5g1265 577 Coils Coil 114 134 - -
Vra5g1265 577 Pfam Protein kinase domain 305 557 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra5g1265 577 MobiDBLite consensus disorder prediction 116 130 - -
Vra5g1265 577 MobiDBLite consensus disorder prediction 228 250 - -
Vra5g1265 577 ProSiteProfiles Protein kinase domain profile. 304 557 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra5g1265 577 SMART serkin_6 304 557 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra5g1265 577 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 58 570 - -
Vra5g1265 577 SUPERFAMILY Protein kinase-like (PK-like) 283 562 IPR011009 -
Vra5g1265 577 ProSitePatterns Protein kinases ATP-binding region signature. 310 332 IPR017441 GO:0005524
Vra5g1265 577 MobiDBLite consensus disorder prediction 116 144 - -
Vra5g1265 577 MobiDBLite consensus disorder prediction 10 36 - -
Vra5g1265 577 ProSitePatterns Serine/Threonine protein kinases active-site signature. 423 435 IPR008271 GO:0004672|GO:0006468
Vra5g1265 577 MobiDBLite consensus disorder prediction 267 292 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1265 Vra-Chr5 19462006 19469399 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g1265 4 561 MAP Kinase Kinase Kinase AT4G08500 48.867 6.21e-170 494
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Vra5g1265 Pkinase 1.7e-68 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1265 K13414 - gmx:100819999 920.228
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g1365 6 26793677 26806249 Vra5g1265 5 19462006 19469399 PCT