Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1264 ATGCGTCACAGGCAGCTCCCTCGTTTCCTGAAGCAAAATGTAAGACGTCATGAACAATTCAGATGGGCTGCTACAAGAGGAGTTGATGAGGAAACTATTCTTAGAGACCTTCCCACAGATCTAAGACGTGACATCAAACGCCACCTTTGCCTCAATCTAGTTCGACAAGTACCATTGTTTGATCAAATGGATGAGAGGATGCTAGATGCAATATGTGAAAGGCTGAAACCTTCTCTTTTCACTCCAGGGGCTTGTGTGGTTCGTGAAGGTGACCTTGTGAATGAGATGCTTTTCATTGTTAGAGGACGCCTAGATTCTTGCACCACCAATGGTGGCAGAACAGGTTTCTTCAACTCATGCAGACTTGGCTCTGGTGACTTCTGTGGTGAAGAGCTTCTGCCATGGGCCTTGGACCCTCGTCCAACGGTTGCCCTTCCTTCCTCAACTCGCACAGTGAAAGCCATCACTGAAGTGGAAGCCTTTGCACTCATTGCTGGGGACTTGAAGTTTGTGGCAGCACAGTTCAGAAGGTTGCACAGCAAACAACTGAGGTATACTTTTAGGTTCCACTCCCATCAGTGGAGGACTTGGGCTGCATGCTTCATACAAGCTGCATGGTTCAGGTATAAGAGAATAAAGGAGACAAGTGAGCTCAAGAGAAAGGAGAATATGATGATGGCTTTTGTGCCTGGAACTTGCACTGAACATTTCTCTGCACCTCTTCAAGCTCCAATGGGCACTATGTATGCTGCAAAACTAGCATCCGGCCCAAGGAAAGGTAGAAGCCTGAGATACGGACCTGAACTTGATATCCTTGGCTCACTGAGGAAGCCCCTTGAACCAGACTTCACTGATGATGACAGTTAA 867 0.4729 MRHRQLPRFLKQNVRRHEQFRWAATRGVDEETILRDLPTDLRRDIKRHLCLNLVRQVPLFDQMDERMLDAICERLKPSLFTPGACVVREGDLVNEMLFIVRGRLDSCTTNGGRTGFFNSCRLGSGDFCGEELLPWALDPRPTVALPSSTRTVKAITEVEAFALIAGDLKFVAAQFRRLHSKQLRYTFRFHSHQWRTWAACFIQAAWFRYKRIKETSELKRKENMMMAFVPGTCTEHFSAPLQAPMGTMYAAKLASGPRKGRSLRYGPELDILGSLRKPLEPDFTDDDS* 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1264 288 Gene3D Jelly Rolls 57 177 IPR014710 -
Vra5g1264 288 Gene3D Helix hairpin bin 1 50 - -
Vra5g1264 288 PANTHER PROTEIN CNGC15A 1 285 - -
Vra5g1264 288 SMART cnmp_10 59 190 IPR000595 -
Vra5g1264 288 ProSiteProfiles cAMP/cGMP binding motif profile. 59 142 IPR000595 -
Vra5g1264 288 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 1 285 - -
Vra5g1264 288 SUPERFAMILY cAMP-binding domain-like 1 181 IPR018490 -
Vra5g1264 288 CDD CAP_ED 59 190 IPR000595 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1264 Vra-Chr5 19449645 19458032 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g1264 1 286 Ion Channels AT2G28260 63.986 6.39e-121 358
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1264 K05391 - gmx:100815543 563.918