Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1263 ATGGGTCGTCGTCGTCTATCAGAGTCGAATTTGGTTCAAGAACTGGTTCTGTACGCAGCTAGCGCAGCACTGAGTTGCTTGGTCTTGTGTATTGGTATCCGACAACTCGACCCGAATCGCGAGGCTTCCAAAAAGGCCCTTCAGAACAAAAAGGAGATAGCCAAACGCCTTGGTCGTCCTCTTGTTAACACAAACCCTTACGAGGATGTCATAGCATGCGATGTTATCAATCCTGACCACATTAATGTGGAGTTTAACTCAATCGGAGGATTGAAAACTACAAAGCAAGCCCTATATGAACTTGTTATTCTGCCTCTAAGAAGACCTGACCTGTTTTCTCATGGTAAACTTCTTGGGCCACAAAAGGGTGTCCTTCTGTATGGACCCCCTGGCACGGGGAAGACCATGCTTGCCAAAGCTATTGCTAAGGAGTCTGGAGCAGTTTTCATCAATGTTAGGATATCAAACCTGATGAGCAAGTGGTTTGGAGATGCCCAGAAGCTTGTGGCTGCCATATTTAGCCTAGCTCATAAGCTCCAGCCTGCCATCATATTCATAGATGAAGTCGACAGCTTTTTGGGTCAGCGTCGTCCAACAGATCACGAGGCTTTGTTAAACATGAAAACCGAATTCATGGCTCTGTGGGATGGTTTTACTACTGATAAGAATGCTCAAGTTATGGTCCTTGCTGCTACTAATCGTCCTTCAGAACTTGATGAAGCAATACTTAGACGACTTCCTCAAGCATTTGAAATTGGTATTCCGGACCAAAAGGAGAGGGCTGACATATTGAATGTTATCTTGAAGGGTGAGAGGATTGAAGAAAACATTGACTTTGACCATATAGCTTTCTTATGTGAGGGTTACACTGGTTCGGATCTATTTGACCTGTGCAAGAAAGCTGCATATTTTCCAATTAGAGATCTTCTGGATGAAGAGAAGAAAGGGAGAAGTGTTTCTGCTCCTAGACCATTGTCCCAGTTAGACTTGGAGAAGGCCCTGGCCACATCACGAAAGACTACTGATGCTGCAATTGAATACAATGGATTAAGTGCTGATACTCTAAGATGGGCAAGGCAGAGGGAACCTGGTGGTGATTATCAGGTTCAAGCTGCCATTAATGAACTCTCTAAGTTTGTGGTATCTCACATGACTAGTCGCCAGCCAGATGCTAAAGATGTTTAA 1185 0.4439 MGRRRLSESNLVQELVLYAASAALSCLVLCIGIRQLDPNREASKKALQNKKEIAKRLGRPLVNTNPYEDVIACDVINPDHINVEFNSIGGLKTTKQALYELVILPLRRPDLFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGAVFINVRISNLMSKWFGDAQKLVAAIFSLAHKLQPAIIFIDEVDSFLGQRRPTDHEALLNMKTEFMALWDGFTTDKNAQVMVLAATNRPSELDEAILRRLPQAFEIGIPDQKERADILNVILKGERIEENIDFDHIAFLCEGYTGSDLFDLCKKAAYFPIRDLLDEEKKGRSVSAPRPLSQLDLEKALATSRKTTDAAIEYNGLSADTLRWARQREPGGDYQVQAAINELSKFVVSHMTSRQPDAKDV* 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1263 394 CDD AAA 118 253 - -
Vra5g1263 394 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 3 349 - -
Vra5g1263 394 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 83 335 IPR027417 -
Vra5g1263 394 Pfam ATPase family associated with various cellular activities (AAA) 124 253 IPR003959 GO:0005524|GO:0016887
Vra5g1263 394 Pfam AAA+ lid domain 276 312 IPR041569 -
Vra5g1263 394 SMART AAA_5 120 256 IPR003593 -
Vra5g1263 394 Gene3D - 255 335 - -
Vra5g1263 394 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 26 - -
Vra5g1263 394 Gene3D - 82 342 IPR027417 -
Vra5g1263 394 PANTHER ATPASE FAMILY AAA DOMAIN-CONTAINING PROTEIN 1-LIKE 3 349 - -
Vra5g1263 394 ProSitePatterns AAA-protein family signature. 226 245 IPR003960 GO:0005524|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1263 Vra-Chr5 19433300 19440331 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g1263 83 314 Calmodulin-binding Proteins AT3G56690 32.773 2.05e-34 133
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1263 K22530 - gmx:100791694 684.1