Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1261 ATGACTGAACTCCGAAGCGGAAGAAACCGGGAAACGTTCCATGACCCAAACCCAAACCCGAACACAAAAGCCCGCCAGAGAAGAACGAGAAGAACCGCTGTCAACCCCGGGAGGTACAATCGCAACACACTCGAGCGTTGTAGAATCGGTAACCGTGAGTTAGGAGAGAAGGAGCCACAACAGCAACACGCGCCTCTGCTTAGGGTTTCGGAAGAAGGTAAAGAGAAAGACATGGATGATGAGTTCGATAGCGGCGGTGGCCGGAGCCCCGACAAGGCTGCGCCCGCCGAAGACGAAGGAAGCACTGCTCCCATTCCCGAGAGGGTACAGGTAGGTGGTTCTCCGTTGTACAAATTAGACAGAAAACTTGGGAAGGGAGGGTTTGGACAAGTTTACGTAGGTAGGCGAGTTGGGGCTGGTGCCGGAGCGTTAGAGGTAGCTTTGAAGTTTGAACATAGAAGCAGTAAGGGGTGCAATTATGGACCTCCATATGAGTGGCAAGTTTACAATGCATTGGGTGGTAGTCATGGTGTTCCTCGTGTTCATTACAAGGGACGGCAAGGTGATTACTATGTTATGGTCATGGATATGCTTGGCCCTAGTCTGTGGGATGTCTGGAATAACAACTCAAACACAATGTCTGCGGAAATGGTGGCATGTATAGCAATTGAGGCCATCTCCATATTAGAGAAGATGCATTCTAAAGGGTATGTCCACGGTGATGTAAAACCTGAGAATTTTTTGCTTGGCACCCCTGGAACTGCTGATGAGAAAAAGCTTTTCCTAGTTGATCTTGGTTTAGCAACCCGTTGGCGTGATAGTTCAACTGGCTTTCATGTTGAGTATGATCAACGTCCTGATGTATTTAGAGGAACAGTTCGATATGCTAGTGTGCATGCTCATCTTGGTAGAACAGGAAGCAGGAGAGATGATTTGGAATCTCTTGCTTACACATTGATTTTCCTTCTTCGTGGCCGGCTACCTTGGCAAGGATACCAGGGAGAAAATAAAGGATTTCTTGTGTGCAAGAAAAAGATGGCAACCTCACCAGAAACTTTGTGTTGTGTCTGTCCTCCACCTTTCCGGCAGTTTGTGGAATACGTAGTGAATTTGAAGTTTGATGAAGAACCAAATTATGCGAAGTATATATCACTTTTTGATGGAATTGTTGGACCAAATCCAGATATCAGACCCATAAATACCGAAGGTGCACAAAAGCTTATATATCTGGTTGGACATAAGAGAGGACGGTTAACTGTGGAAGAAGATGATGACGAACAACCGAAGAAGAGAGTAAGAATGGGAATGCCAGCAATGCAATGGATTAGTGTGTACAATGCCCGCCGACCAATGAAGCAAAGGTACCATTACAATGTTGCTGATGCGCGGTTGTCCCAACACATTGAAAAGGGATATGAGGATGGGTTATTTATCAGCAGTGTAGCTTGTTGTTCTAACCTATGGGCACTTATTATGGATGCTGGCACTGGTTTCACTGCTCAAGTTCATGAACTCTCACCCCACTTTCTTCATAAGGAATGGATTATGGAACAGTGGGAAAATAATTATTACATCAGTGCAATAGCAGGATCTAATAATGGGAGCTCATTGGTTGTAATGTCTAAAGGGACCCAATATATGCAGCAATCTTATAAAGTCAGCGAGTCATTTCCATTTAAGTGGATCAATAAAAAATGGAGAGAAGGATTTTCTGTCACTTCTATGGCTACTGCTGGGAGTAGATGGGCAATTGTAATGTCCCGTGGTGCTGGATATTCAGACCAGGTTGTGGAACTTGATTTCCTGTATCCTAGTGAGGGCATTCATCGCAGGTGGGACAATGGTTACCGCATCACTTCAACTGCTGCCACATGGGACCAAGCTGCTTTTGTTCTTAGCGTCCCAAGAAGAAAACCGACTGATGAAACTCAAGAGACACTCCGCACATCTGCCTTTCCTAGTAGTCACGTCAAGGAAAAATGGTCTAAAAATCTCTATATTGCATCAATATGCCATGGGAGAACAGTTTCATGA 2034 0.4518 MTELRSGRNRETFHDPNPNPNTKARQRRTRRTAVNPGRYNRNTLERCRIGNRELGEKEPQQQHAPLLRVSEEGKEKDMDDEFDSGGGRSPDKAAPAEDEGSTAPIPERVQVGGSPLYKLDRKLGKGGFGQVYVGRRVGAGAGALEVALKFEHRSSKGCNYGPPYEWQVYNALGGSHGVPRVHYKGRQGDYYVMVMDMLGPSLWDVWNNNSNTMSAEMVACIAIEAISILEKMHSKGYVHGDVKPENFLLGTPGTADEKKLFLVDLGLATRWRDSSTGFHVEYDQRPDVFRGTVRYASVHAHLGRTGSRRDDLESLAYTLIFLLRGRLPWQGYQGENKGFLVCKKKMATSPETLCCVCPPPFRQFVEYVVNLKFDEEPNYAKYISLFDGIVGPNPDIRPINTEGAQKLIYLVGHKRGRLTVEEDDDEQPKKRVRMGMPAMQWISVYNARRPMKQRYHYNVADARLSQHIEKGYEDGLFISSVACCSNLWALIMDAGTGFTAQVHELSPHFLHKEWIMEQWENNYYISAIAGSNNGSSLVVMSKGTQYMQQSYKVSESFPFKWINKKWREGFSVTSMATAGSRWAIVMSRGAGYSDQVVELDFLYPSEGIHRRWDNGYRITSTAATWDQAAFVLSVPRRKPTDETQETLRTSAFPSSHVKEKWSKNLYIASICHGRTVS* 678
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1261 677 ProSitePatterns Serine/Threonine protein kinases active-site signature. 237 249 IPR008271 GO:0004672|GO:0006468
Vra5g1261 677 MobiDBLite consensus disorder prediction 45 59 - -
Vra5g1261 677 Gene3D Transferase(Phosphotransferase) domain 1 92 402 - -
Vra5g1261 677 ProSiteProfiles Protein kinase domain profile. 117 410 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra5g1261 677 SUPERFAMILY Protein kinase-like (PK-like) 117 390 IPR011009 -
Vra5g1261 677 SMART serkin_6 117 410 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra5g1261 677 Pfam Protein kinase domain 117 344 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra5g1261 677 CDD STKc_CK1 117 386 - -
Vra5g1261 677 PANTHER CASEIN KINASE-RELATED 80 651 - -
Vra5g1261 677 MobiDBLite consensus disorder prediction 68 95 - -
Vra5g1261 677 ProSitePatterns Protein kinases ATP-binding region signature. 123 149 IPR017441 GO:0005524
Vra5g1261 677 PANTHER - 80 651 - -
Vra5g1261 677 MobiDBLite consensus disorder prediction 1 113 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1261 Vra-Chr5 19365602 19370593 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g1261 116 272 EF-hand Containing Proteins AT2G17290 30.675 7.17e-09 57.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1-Pl Vra5g1261 Pkinase 3.7e-18 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1261 - - pop:7476691 1154.04