Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1254 ATGACACCTGGTTACGAATACGATATTAATGATCTGCATCAAGAAGCTCAAGCCAGATGGCTGAAGCCAGCAGAAGTGATGTACATTTTACAGAATCATGAAAAGTTCCAGCTCACCCAAGAGCCCCCGCAACAGCCAACCAGTGGATCCCTGTTTCTGTTTAACAAAAGAGTCCTTCGTTTCTTCCGGAAAGATGGTCATAACTGGCGCAAGAAAAGAGATGGAAGAACTGTGGGAGAAGCACACGAACGGCTCAAGGTTGGAAATGTTGAAGCCTTAAATTGTTACTATGCACATGGAGAGCAGACACCTAGTTTCCAGAGGCGGAGCTATTGGATGTTGGATCCGGAATATGAGCATATTGTTCTTGTGCATTATAGAAACACAAGTGAGGGAAGACTCAGTTCTGGAGCTGGGGCACAATTGTCACCAAGTTCCTCTTCTGCATTTAGTCAGAGTCCTAGCCCTTATTCTAATCAGAATCCAGGGTCAACATCCATACTCGTTGATTCATATGAACCTAATCAGAGTTTCTCCAGTCCTGGAACTACAGAAGTTACGTCTGATATATTCACTCTGAACAATAAAATGGATCACATGGATGGAACCGATGCAGAATCAGGAACCTCATCTGAGCTTGAAGTTACTCAAGCTTTGCGTCGACTGGAGGTACAATTAAGTTTGAATGAGGAAAGCTTTGAAGATATTGCTCCCTTCTGCAATAAGCATGAAACTGCCCACGTTTCAAACCCTCTGGACAATCAAAGGGTGATCAGCAATCAAGAGCAATCTGCTGCTTTCTCTGGACCTGTTAATCAAGGGCTATTTTATGATGAATATAATGGAAGACAAGGTGATGGAAGTCAATGCTATCATGAACTAATAGACCATGGTTACCCAGATGAAAATGAAGAGGCTTTATGGACAGGGGTGCTGGAATCGTGCAAGTCCTCAACTGCTGTCAAGTTACCACCGGAAAATGTATACATGGCAGCTGAAAATGAAAATTCAGTATCTTTTTCGAGAAGGGTACAAGTACCAGTTTCCAAACAGGAAGAGAATCACTGGCTCAACTTCAACAGTGATAATTCTCAAAGCTCCGTTTTCTCACCACCTCAAGGGGTTGATGATGTCAAATTTCCTGCATATTCTTCTGTGGTGGAAACACGAGTAACTAATTCTGGCTACTATGAAACATTGTTTGACCAAAGCCAAATTATAGCACCTCTAGATGCAGATTCAAGCTTGACTATTGCACAAAAACAGAAATTTACCATTAAGACATTCTCCCCAGAATGGGGTTATGCCACTGAGACCACAAAGGTCATCATTGTTGGGTCTTTTCTGTGTCATCCATCAGATTCTACCTGGGCATGCATGCTTGGTGATGTTGAAGTTCCTGTTCAGATAATTCATGATGGTGTAATCTGTTTTGAAGCTCCTCCTCACCTTCCTAAAAAGGTTACACTGTGCATTACTTCCGGAAACCGGGAGTCCTGCAGTGAAGTCAGAGAGTTTGAATACCGTGATAAGACTTATAGTTGCACCCAATGTAATCAATCAAAAACAGAAGCCACTAGAAGTCCTGAAGAGCTGTTATTACTTGTTAGATTAGGACAGATGCTTCTTTCTACATCAACAATAAAGAACGACCACATAGAACCCGGAATTCCTCTCATAAAACAGAAAGCTGATGATGATTCATGGAGCCATATTATAGAGACTCTTCTAGTTGGCAGTGGAACATCGACTAGTATTACTGATTGGCTTCTTGAAGAGCTTCTAAAGGATAAGCTTCAACAGTGGCTTTCTTACAGATCTCAGGAAAGAGATGAAGAGACAGGCTGCTCTTTGTCCAAGAAAGAGCAAGGCATTATTCACATGGTTGCTGGATTGGGTTTTGAGTGGGCCTTGAACCCTATTCTTAGTTGTGGAGTTAACATAAATTTCCGTGACATCAATGGGTGGACTGCCCTTCATTGGGCTGCCCGTTTCGGAAGGGAAAAAATGGTTGCTTCACTTGTAGCTTCTGGAGCATCTGCTGGAGCTGTGACAGATCCAACTGCACAAGACCCAATCGGAAAAACTGCTGCATCTATTGCAGCCAGCAATGGGAACAAGGGACTAGCAGGATATCTTTCAGAGGTAGCTGTAACAAGCCACCTATCATCACTTACATTGGAAGAGAGTGAGTTATCTAAAAGTACTGCCCAGCTTCAGGCAGATATGACTGTGACCAGTGTCTCCAAGGAAAATCTTGCTGCCAATGAGGATCAGGCGTCACTCAAAGATACCTTGGCTGCTGTAAGAAATGTAACTCAGGCAGCTGCCCGGATACAATCTGCTTTTCGGTCACATTCTTTTAGAAAACGGAGAGCAAGAGAAGCAGCTGCTGGTGTAGATGGTACGAGTATAGGTGGCTTTGGTAGCATTCCAGAAATTTCTGCTTTGTCAAAACTTGCCTTTCGAAACTCACGCGAACATAATTCAGCTGCTTTATCAATTCAGAAGAAATATCGTGGTTGGAAAGGTCGCAAAGATTTCTTATCGTTGCGCCAAAAAGTAGTGAAGATACAGGCTCATGTGAGGGGTTACCAGGTTAGGAAGCATTACAAGGTAATATGGGCAGTTGGAATCCTGGATAAGGTCGTGCTGCGATGGAGAAGAAAAGGAGCTGGTTTACGAGGTTTCCGACAAGAGATGGACATCCATGAAGATGAAGATGAAGATATTCTCAAGGTGTTCCGAAAACAGAGAGTGGATGTAGAAATTGAAAAGGCCGTTTCACGGGTGCTGTCCATGGTCGACTCACCAGATGCTCGTGACCAATATCATCGCATGCTTGAGAAATATCGTCAAGCTAAGGCTGAACTTGCTGGTACGAGTGACGAAGCATCATCAACAACTTCTGTGGGGAATGCCTTATTTATGGAGGATGACTTCTATCCATTTCCATAG 2958 0.4324 MTPGYEYDINDLHQEAQARWLKPAEVMYILQNHEKFQLTQEPPQQPTSGSLFLFNKRVLRFFRKDGHNWRKKRDGRTVGEAHERLKVGNVEALNCYYAHGEQTPSFQRRSYWMLDPEYEHIVLVHYRNTSEGRLSSGAGAQLSPSSSSAFSQSPSPYSNQNPGSTSILVDSYEPNQSFSSPGTTEVTSDIFTLNNKMDHMDGTDAESGTSSELEVTQALRRLEVQLSLNEESFEDIAPFCNKHETAHVSNPLDNQRVISNQEQSAAFSGPVNQGLFYDEYNGRQGDGSQCYHELIDHGYPDENEEALWTGVLESCKSSTAVKLPPENVYMAAENENSVSFSRRVQVPVSKQEENHWLNFNSDNSQSSVFSPPQGVDDVKFPAYSSVVETRVTNSGYYETLFDQSQIIAPLDADSSLTIAQKQKFTIKTFSPEWGYATETTKVIIVGSFLCHPSDSTWACMLGDVEVPVQIIHDGVICFEAPPHLPKKVTLCITSGNRESCSEVREFEYRDKTYSCTQCNQSKTEATRSPEELLLLVRLGQMLLSTSTIKNDHIEPGIPLIKQKADDDSWSHIIETLLVGSGTSTSITDWLLEELLKDKLQQWLSYRSQERDEETGCSLSKKEQGIIHMVAGLGFEWALNPILSCGVNINFRDINGWTALHWAARFGREKMVASLVASGASAGAVTDPTAQDPIGKTAASIAASNGNKGLAGYLSEVAVTSHLSSLTLEESELSKSTAQLQADMTVTSVSKENLAANEDQASLKDTLAAVRNVTQAAARIQSAFRSHSFRKRRAREAAAGVDGTSIGGFGSIPEISALSKLAFRNSREHNSAALSIQKKYRGWKGRKDFLSLRQKVVKIQAHVRGYQVRKHYKVIWAVGILDKVVLRWRRKGAGLRGFRQEMDIHEDEDEDILKVFRKQRVDVEIEKAVSRVLSMVDSPDARDQYHRMLEKYRQAKAELAGTSDEASSTTSVGNALFMEDDFYPFP* 986
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1254 985 SMART CG_1_2 12 130 IPR005559 GO:0003677
Vra5g1254 985 Gene3D - 827 876 - -
Vra5g1254 985 SUPERFAMILY E set domains 425 509 IPR014756 -
Vra5g1254 985 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 819 874 IPR027417 -
Vra5g1254 985 Pfam Ankyrin repeats (3 copies) 636 714 IPR002110 GO:0005515
Vra5g1254 985 Pfam IPT/TIG domain 425 508 IPR002909 -
Vra5g1254 985 Gene3D Immunoglobulins 419 513 IPR013783 -
Vra5g1254 985 Gene3D - 561 719 IPR036770 -
Vra5g1254 985 ProSiteProfiles Ankyrin repeat profile. 654 686 IPR002110 GO:0005515
Vra5g1254 985 SUPERFAMILY Ankyrin repeat 624 716 IPR036770 -
Vra5g1254 985 Coils Coil 944 964 - -
Vra5g1254 985 ProSiteProfiles Ankyrin repeat region circular profile. 654 680 - -
Vra5g1254 985 ProSiteProfiles CG-1 DNA-binding domain profile. 9 135 IPR005559 GO:0003677
Vra5g1254 985 ProSiteProfiles IQ motif profile. 773 801 IPR000048 GO:0005515
Vra5g1254 985 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 5 977 - -
Vra5g1254 985 Pfam CG-1 domain 15 128 IPR005559 GO:0003677
Vra5g1254 985 SMART iq_5 827 849 IPR000048 GO:0005515
Vra5g1254 985 SMART iq_5 850 872 IPR000048 GO:0005515
Vra5g1254 985 SMART iq_5 771 793 IPR000048 GO:0005515
Vra5g1254 985 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 4 5 977 - -
Vra5g1254 985 SMART ANK_2a 693 722 IPR002110 GO:0005515
Vra5g1254 985 SMART ANK_2a 654 683 IPR002110 GO:0005515
Vra5g1254 985 CDD IPT 425 510 - -
Vra5g1254 985 Pfam IQ calmodulin-binding motif 853 872 IPR000048 GO:0005515
Vra5g1254 985 Pfam IQ calmodulin-binding motif 830 848 IPR000048 GO:0005515
Vra5g1254 985 ProSiteProfiles IQ motif profile. 851 876 IPR000048 GO:0005515
Vra5g1254 985 ProSiteProfiles IQ motif profile. 828 857 IPR000048 GO:0005515
Vra5g1254 985 MobiDBLite consensus disorder prediction 133 186 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1254 Vra-Chr5 18990156 19018320 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g1254 5 961 CAMTA Transcription Factor Family AT1G67310 52.806 0.0 914
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CAMTA Vra5g1254 CG-1 2.8e-49 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1254 K21596 - gmx:100786880 1621.29