Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1250 ATGAGTAGTTTGGTGGAGAGGCTTCGTGTAAGATCAGATCGCAGGCCAATTTATAATCTTGACGAGTCAGACGACGATGCTGATTTTTTGCCAAGAAAACCCGGGACAACACAGGAAAAGTTGGAGAGAATAGTGAGAACTGATGCGAAAGAGGATTTATGTCAAGCCTGCGGTGAAAATGAGAATCTTGTGAGTTGTGAAACTTGCACTTATGCATACCATCCTAGGTGTTTACTTCCACCCCTTAAGGGACCTCTTCCAGACAATTGGAGATGCCCCGAATGTGTTAGCCCACTTAATGATATTGACAAAATATTAGATTGTGAGATGCGACCTACTACAGCTGCTGACAATGATGCCACAAAATTAGGGTCAAAACAAATTTTTGTTAAACAATACCTTGTTAAGTGGAAAGGCCTATCATATCTGCACTGCACATGGGTGCCGGAGAAAGAGTTTTTGAAGGCATTTAAGACTCATCCTCGTCTAAAGACAAAAGTGAACAACTTCCATCAGAAAATGGCATCTATCAATACTTCTGATGATGACTTTGTTGCCATTCGACCTGAGTGGACTACAGTTGACCGGATACTTTCTTGCAGGGGTGATGATGATGATAGAGAATACCTTGTGAAGTGGAAGGAACTTCCATATGATGAGTGTTATTGGGAGTTTGAATCAGATATTTCTGCATTTCAGCCAGAAATAGAAAGATTCAATAGATTGCGGTCTAGATCCAGTAAATTTTCTTCTAGTAAACATAAAGAGAGTGTTAAAGATGATACTGAATTGAAGAAACAGCAGAAAGAATTTCAACATTATGAACACAGCCCTGAGTTTCTCTCAGGTACACTGCACCCATATCAGCTTGAAGGCTTGAACTTCTTACGATTCTCTTGGTCCAAGCAGACTCATGTTATACTTGCTGATGAAATGGGGCTTGGAAAAACCATACAAAGTATTGCTTTCCTGGCATCCCTTTTTGAAGAGAGTGTCTCCCCACATCTGGTGGTTGCTCCACTTTCAACTCTACGAAATTGGGAACGTGAATTCGCAACATGGGCACCTCATATGAATGTGCTAATGTATGTTGGATCTGCCCAAGCTCGTAGTGTAATAAGAGAGTATGAATTTTACTTTCCAAAGAAACAAAAGAAGATCAAGAAAAAGAAATCTGGTCAGCTAATTAGTGAAAACAAGCAAGAGAGGATTAAGTTTGATGTTCTTTTGACATCGTATGAGATGATCAACTTTGACACGACATCACTAAAACCTATAAAATGGGAGTGCATGATAGTCGATGAAGGTCACCGTCTGAAAAATAAGGATTCTAAATTATTTTCCTCACTGAAGCAATATTCTAGCAGGCATCGTGTTCTCTTAACAGGAACTCCTCTTCAGAACAACTTGGATGAGCTTTTTATGCTTATGCATTTCCTTGACGCTGGGAAGTTTGGAAGTTTAGAGGAGTTCCAGGAAGAGTTTAGGGATATCAATCAAGAGGAGCAGATTTCAAGGCTTCATAAAATGTTGGCCCCACATCTCTTGCGAAGAGTGAAGAAAGATGTCATGAAGGAATTACCTCCTAAAAAGGAACTTATTCTACGTGTTGAGTTGAGCAGCAAACAGAAAGAATATTATAAGGCAATTTTGACCCGTAATTATCAGATATTAACTCGTCGCGGTGGTGCTCAGATTTCTCTTATCAATGTTGTTATGGAATTGCGGAAACTTTGTTGTCATCCTTACATGTTAGAAGGAGTGGAACCAGATATTGATGATGCTAAAGAGGCATACAAACAGCTATTGGAAACGTCAGGGAAGCTGCAATTGCTGGACAAGATGATGGTCAAACTTAAAGAGCAAGGACATAGAGTGCTTATATATTCCCAATTTCAGCACATGCTGGACTTGCTTGAAGATTACTGTACTTACAAGAATTGGCAGTATGAGAGGATCGATGGCAAGGTTGGCGGAGCTGAAAGACAAGTTCGGATAGATCGATTTAATGCCAAAAATTCTTCAAGATTTTGCTTTCTTCTTTCAACTAGAGCTGGGGGATTGGGGATAAACCTTGCAACTGCTGACACGGTTATCATATATGATAGTGATTGGAATCCTCATGCTGATTTACAAGCTATGGCTAGAGCTCACAGACTCGGACAAACTAACAAGGTGTTAATTTATAGGCTTATAACACGAGGAACTATTGAAGAGAGGATGATGCAGATGACTAAGAAGAAAATGGTGTTAGAACACCTAGTTGTGGGGAGGCTAAAGGCTCAAAATATCAACCAGGAAGAGTTGGATGACATCATAAGATATGGATCAAAGGAGTTATTTGCAGATGAGAATGATGAAGCTGGCAAATCCCGCCAAATCCATTATGATGCTGCTGCTATTGATAGATTGCTGGATCGTGATCAAGTTGGAGATGAAGAGGCCACTTTGGATGACGAGGAAGAAGATGGATTTCTGAAAGCTTTTAAGGTTGCAAATTTTGAGTATGTTGATGAGGCTGAAGCTGCAGCAGAGGAGGCTGCCGCCCAAAAAAGAGCATTAGAGAATGTGAACAGTTCGGAGAGAACACATTACTGGGAGGAGTTGTTAAGAGACAAGTATCAAGAGCATAAAGTTGAGGAGTTTAATGCCTTGGGAAAAGGGAAGCGTAACCGGAAGCTGATGGTTTCTGTGGAGGAGGATGACCTTGCTGGTCTGGAGGATGTTAGCTCTGATGGTGAAGATGATAATTATGAAGCAGAGCTTACTGATGGTGATTCAAATTCCACTGGAACTGGAACTACTACTGCTAAAAGGCCCTATAAGAAAAAAGCTCGTAATAGCACAGAGCCACTTCCTCTGATGGAAGGTGAAGGAAAAGCATTCAGAGTCCTTGGTTTTAATCAAAATCAAAGGGCTGCATTTGTTCAAATTTTGATGAGGTTTGGGGTTGGTGATTTTGATTGGAAGGAATTTACTTCCCGCATGAAACAGAAGACTTACGAAGAAATTAAAGATTATGGAACCCTTTTCTTGTCTCATATCTCTGAAGATATAACCGAGTCCTCTACATTCTCAGATGGTGTACCAAAAGATGGACTACGAATCCAAGATGTACTTGTAAGGATTGCAGTCCTTCTATTGATAAGGGACAAGGTGAAGTTTGCGTCACAAAATCCTCAAACTCCATTGTTTTCAGATGACATCTTATTTCGCTATCCAGGTTTGAAGGGTGCGAAAATATGGAAGGAGGAGCATGATTTGGTTTTGTTGCGTTCCGTTTTAAAGCATGGTTATGGAAGGTGGCAAGCTATTGTTGATGACAAGGATCTGAAAATTCAGGAGGTCATCTGTCAGGAGTTGAATCTTCCCTTTATAAACTTACCAGTTCCAGGACAAGTTGGCTCTCAGCCACAAAATGGTGCAAATTTGACAAATGCTGAAGTACCCAACAGTCAATCCAGGGAAAATGGTGGAAGTGATATACCAGCCGATGGTGCGCAAGGTTCTGGTGATGCCAGGAATCAAGCACAATTATATCAAGACTCCTCCATATTATATCATTTTAGAGACATGCAAAGAAGACAAGTTGAGTTTATAAAAAAGAGGGTTCTTCTTTTGGAAAAAGGGCTTAATGCTGAGTACCAGAAAGAATACTTTGGCGATCCAAAATCAAATGACGAACTTAAAAGTGAACCCAAGGCTCCTAAATTAGGGGAAACTGATACCCAAATGATTGAACAACTACCGCAAGTAGAAACAATAGCTACAGAAGAAATTTCGTCTGCTTGTGATAGTGATCCTAATCGATTGGAGTTAGTTCGTCTTTACAATGAGATGTGCAAGACAGTGGAGGAAAACCCCACGGATTTAGTTCAAACATCTTTGGCAAGAGAACCAGCAGAGCTTCATGTAGGGAAGAATTTCTTACCCCTAGAAACCATCTGCAAAGACATCGACAGAATTCTAACGCCCACAGAAGAACAATCTGCTGCAGATATTCCGATGTCAAATTCAGAGAACAAATCAGAGGTTATGTCCAAGAGCGAGATTTTGGACGCCAAATCACTGCCAACCCCTCATGACTCCGCAAACAATGAGAGTAAAGACATGCTAATAGATACGAATGAAATTCAGACTCTTCCGGACAAAGAGAAAAGTAATACAGTAATGGATGAAACTATGACTGATGCTCAGTAG 4200 0.405 MSSLVERLRVRSDRRPIYNLDESDDDADFLPRKPGTTQEKLERIVRTDAKEDLCQACGENENLVSCETCTYAYHPRCLLPPLKGPLPDNWRCPECVSPLNDIDKILDCEMRPTTAADNDATKLGSKQIFVKQYLVKWKGLSYLHCTWVPEKEFLKAFKTHPRLKTKVNNFHQKMASINTSDDDFVAIRPEWTTVDRILSCRGDDDDREYLVKWKELPYDECYWEFESDISAFQPEIERFNRLRSRSSKFSSSKHKESVKDDTELKKQQKEFQHYEHSPEFLSGTLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFEESVSPHLVVAPLSTLRNWEREFATWAPHMNVLMYVGSAQARSVIREYEFYFPKKQKKIKKKKSGQLISENKQERIKFDVLLTSYEMINFDTTSLKPIKWECMIVDEGHRLKNKDSKLFSSLKQYSSRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFRDINQEEQISRLHKMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDIDDAKEAYKQLLETSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYCTYKNWQYERIDGKVGGAERQVRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVLIYRLITRGTIEERMMQMTKKKMVLEHLVVGRLKAQNINQEELDDIIRYGSKELFADENDEAGKSRQIHYDAAAIDRLLDRDQVGDEEATLDDEEEDGFLKAFKVANFEYVDEAEAAAEEAAAQKRALENVNSSERTHYWEELLRDKYQEHKVEEFNALGKGKRNRKLMVSVEEDDLAGLEDVSSDGEDDNYEAELTDGDSNSTGTGTTTAKRPYKKKARNSTEPLPLMEGEGKAFRVLGFNQNQRAAFVQILMRFGVGDFDWKEFTSRMKQKTYEEIKDYGTLFLSHISEDITESSTFSDGVPKDGLRIQDVLVRIAVLLLIRDKVKFASQNPQTPLFSDDILFRYPGLKGAKIWKEEHDLVLLRSVLKHGYGRWQAIVDDKDLKIQEVICQELNLPFINLPVPGQVGSQPQNGANLTNAEVPNSQSRENGGSDIPADGAQGSGDARNQAQLYQDSSILYHFRDMQRRQVEFIKKRVLLLEKGLNAEYQKEYFGDPKSNDELKSEPKAPKLGETDTQMIEQLPQVETIATEEISSACDSDPNRLELVRLYNEMCKTVEENPTDLVQTSLAREPAELHVGKNFLPLETICKDIDRILTPTEEQSAADIPMSNSENKSEVMSKSEILDAKSLPTPHDSANNESKDMLIDTNEIQTLPDKEKSNTVMDETMTDAQ* 1400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1250 1399 MobiDBLite consensus disorder prediction 1359 1375 - -
Vra5g1250 1399 MobiDBLite consensus disorder prediction 1220 1237 - -
Vra5g1250 1399 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 5 1056 - -
Vra5g1250 1399 Pfam Helicase conserved C-terminal domain 608 721 IPR001650 -
Vra5g1250 1399 Gene3D - 528 752 IPR027417 -
Vra5g1250 1399 CDD CD2_tandem 190 239 - -
Vra5g1250 1399 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 44 97 IPR013083 -
Vra5g1250 1399 Gene3D - 188 241 - -
Vra5g1250 1399 ProSiteProfiles Chromo and chromo shadow domain profile. 100 182 IPR000953 -
Vra5g1250 1399 MobiDBLite consensus disorder prediction 1330 1345 - -
Vra5g1250 1399 SUPERFAMILY Chromo domain-like 185 242 IPR016197 -
Vra5g1250 1399 MobiDBLite consensus disorder prediction 923 937 - -
Vra5g1250 1399 PANTHER CHD3-TYPE CHROMATIN-REMODELING FACTOR PICKLE 5 1056 - -
Vra5g1250 1399 ProSitePatterns Zinc finger PHD-type signature. 54 95 IPR019786 -
Vra5g1250 1399 SMART PHD_3 53 96 IPR001965 -
Vra5g1250 1399 ProSiteProfiles Rubredoxin-like domain profile. 61 105 IPR024934 GO:0005506
Vra5g1250 1399 MobiDBLite consensus disorder prediction 904 953 - -
Vra5g1250 1399 SMART chromo_7 190 244 IPR000953 -
Vra5g1250 1399 SMART chromo_7 99 162 IPR000953 -
Vra5g1250 1399 CDD SF2_C_SNF 606 732 - -
Vra5g1250 1399 Pfam PHD-finger 54 96 IPR019787 -
Vra5g1250 1399 Pfam SNF2-related domain 305 585 IPR000330 GO:0005524|GO:0140658
Vra5g1250 1399 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 520 776 IPR027417 -
Vra5g1250 1399 SMART helicmild6 637 721 IPR001650 -
Vra5g1250 1399 SMART DUF1087_2 838 905 IPR009463 -
Vra5g1250 1399 MobiDBLite consensus disorder prediction 1219 1240 - -
Vra5g1250 1399 MobiDBLite consensus disorder prediction 1136 1173 - -
Vra5g1250 1399 ProSiteProfiles Zinc finger PHD-type profile. 51 98 IPR019787 -
Vra5g1250 1399 SMART ultradead3 281 494 IPR014001 -
Vra5g1250 1399 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 269 518 IPR027417 -
Vra5g1250 1399 Pfam CHD subfamily II, SANT-like domain 935 1067 IPR009462 GO:0003677|GO:0006338
Vra5g1250 1399 MobiDBLite consensus disorder prediction 1327 1399 - -
Vra5g1250 1399 MobiDBLite consensus disorder prediction 1136 1159 - -
Vra5g1250 1399 Pfam CHD subfamily II, DUF1087 844 902 IPR009463 -
Vra5g1250 1399 CDD CD1_tandem 98 171 - -
Vra5g1250 1399 Pfam Chromo (CHRromatin Organisation MOdifier) domain 193 241 IPR023780 -
Vra5g1250 1399 Pfam Chromo (CHRromatin Organisation MOdifier) domain 102 157 IPR023780 -
Vra5g1250 1399 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 611 772 IPR001650 -
Vra5g1250 1399 ProSiteProfiles Chromo and chromo shadow domain profile. 192 251 IPR000953 -
Vra5g1250 1399 Gene3D - 282 527 IPR038718 -
Vra5g1250 1399 SMART DUF1086_2 915 1070 IPR009462 GO:0003677|GO:0006338
Vra5g1250 1399 Coils Coil 837 860 - -
Vra5g1250 1399 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 297 483 IPR014001 -
Vra5g1250 1399 Gene3D - 1037 1217 - -
Vra5g1250 1399 SUPERFAMILY Chromo domain-like 66 178 IPR016197 -
Vra5g1250 1399 Gene3D - 98 187 - -
Vra5g1250 1399 MobiDBLite consensus disorder prediction 904 922 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1250 Vra-Chr5 18910583 18931501 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g1250 248 782 RAD5 or RAD16-like Gene Family AT1G02670 23.539 6.50e-32 132
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Vra5g1250 SNF2_N 3.9e-66 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1250 K11643 - gmx:100790230 2493.38