Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1249 ATGACTGTGGAGAAGAGAATGAGTGATTCCGGCGAAGAGTTTCCCGTCGGAATGCGTGTGCTCGCCGTCGATGATGACCCCATCTGCCTCATGGTTTTGGAAAACCTCCTCCGGAAATGTCAATATCATGTAACTACGACAAATCAAGCAATAACAGCGTTGGCGCTTTTGAGAGAACACAAAGACAAGTTTGACCTGGTAATCAGTGATGTGCATATGCCAGACATGGATGGATTTAAGCTGCTTGAGCTAGTGGGACTTGAGATGGACCTTCCCGTCATAATGTTGTCTGCAAACGGTGATACGAAGCTGGTGATGAAAGGGATTTCTCATGGAGCCTGTGATTATCTGCTGAAACCCGTGAGAATGGAGGAGCTCAAGAACATCTGGCAGCATGTAATCAGAAGGAAGAAGTTTGACTCAAAAGAGAAGAACAAAACAAGCAACTTAGACAAACCCACTTCTGATAGTGGCAATGGACATGGATCATCAGGAGCTGTAAATTCAGATCAAAATGAGAAGCTGACTAAGAAACGGAAGGATCAAGATGAAGATGAAGATGAGGAGCAGGAGAATGATCATGACAACGAGGACCCGTCAACCCAGAAGAAACCTCGGGTGGTTTGGTCTGTGGAACTGCACCGCAAGTTTGTTGCTGCTGTTAATCAGCTAGGCATTGACAAGGCTGTACCTAAAAAAATTCTTGATTTGATGAACGTTGAAAAGCTTACAAGGGAGAATGTGGCGAGCCATCTCCAGAAGTACAGGCTTTATCTGAAAAGAATTAGTTGCGTGGCTAACCAACAGGCTAATATGGTGGCGGCCTTAGGGGGTGCAGATCCATCCTATCTGAGAATGAGTTCTGTGAATGGGGTTGGACATTTGCAAACATTGACTGGTTCTGGGCAGCTTCATAACAATGGTTTTAGATCCTTTCCACCTGGTGGGATAATTAATAGGTTGAACACTCCTGCTGGTTTGAATGTGCACGGGTTTCCTTCTGGAGTTCTTCAGTTGAGTCAGTCACAAAATTTAAACAACACTAATGATCATCTGAAGTTCCGGTCCGCCATCACTCCTGTTAATCAGAATGGTGTTCAGGGAATGCCATTGTCTGTTCAAAACAATAAGAGTCTCGTTTCTGTTCAAAATTTGACCTCTGTTTTTAATGCCAAAACAAATTTTCCCATCTCAAATAAACTCCCAGATCCAAGACCAAAAGTAACATCTGATGTAGGTATCTCAAACAATGGCTTGATGTTGGAACCATGCCCTCAAAGCACACAGGGGAGTGTAAGGATTGAAACTTTATCTTCAGTGGCCTCTCAACATTCAGAATTTTCTTTGCCTTTGCTGGATCAAGGTAGGTATAATGATAGTTGGACAAGTGCTGTGCAGCCATCTGTGATGCAGACAAACTCTTACCCTCCAAGTGAATGTTTTAAACCGACAAACATACCTCCTCCAGATAACATGGCTACTATACCCCTGCAAGGTGGGAATCTGACTGGTCCATCCATCACTTCACTGTCCAGGCAATCCCATGATTCAATGACCGATATGCATTCTGAAGGATTGACTTTAAATAACAGACCTACGAATATAAGCAGTAATGTGCCATTTCAAGGGTGGGAGGACCGAAATCACGATGCTACTCATCATTCAAATAATATGTTTGCATCAATAAACTCACTGACTCCAGTCAATGGTGCTGCTGTTCCAGTGGGCCATGCAGCAGCAAACTCAGCCTCACATAGAAATTTGGACTTTAACTTTTGTGATCCCTTACAAATGAAGCATGATGGTTTTGTGGAATTAACTGAAGAGATCTCATCTAGACAACATCAGGGGAATATCCTGAACCAGCAGAAGTCTCAACATAGTCATTTCTCTAGTAATCTTGGTTCATTGGAAGACTTGGTCAGTTCAATGATGAAACAGGAGAAAGACAGGCTGAAATTATTGGATGAGAACCTCATTTGCGATAATTACCCTGGTGGGTTATCTATGTGA 2013 0.4307 MTVEKRMSDSGEEFPVGMRVLAVDDDPICLMVLENLLRKCQYHVTTTNQAITALALLREHKDKFDLVISDVHMPDMDGFKLLELVGLEMDLPVIMLSANGDTKLVMKGISHGACDYLLKPVRMEELKNIWQHVIRRKKFDSKEKNKTSNLDKPTSDSGNGHGSSGAVNSDQNEKLTKKRKDQDEDEDEEQENDHDNEDPSTQKKPRVVWSVELHRKFVAAVNQLGIDKAVPKKILDLMNVEKLTRENVASHLQKYRLYLKRISCVANQQANMVAALGGADPSYLRMSSVNGVGHLQTLTGSGQLHNNGFRSFPPGGIINRLNTPAGLNVHGFPSGVLQLSQSQNLNNTNDHLKFRSAITPVNQNGVQGMPLSVQNNKSLVSVQNLTSVFNAKTNFPISNKLPDPRPKVTSDVGISNNGLMLEPCPQSTQGSVRIETLSSVASQHSEFSLPLLDQGRYNDSWTSAVQPSVMQTNSYPPSECFKPTNIPPPDNMATIPLQGGNLTGPSITSLSRQSHDSMTDMHSEGLTLNNRPTNISSNVPFQGWEDRNHDATHHSNNMFASINSLTPVNGAAVPVGHAAANSASHRNLDFNFCDPLQMKHDGFVELTEEISSRQHQGNILNQQKSQHSHFSSNLGSLEDLVSSMMKQEKDRLKLLDENLICDNYPGGLSM* 671
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1249 670 MobiDBLite consensus disorder prediction 509 534 - -
Vra5g1249 670 MobiDBLite consensus disorder prediction 151 171 - -
Vra5g1249 670 CDD REC_typeB_ARR-like 20 134 - -
Vra5g1249 670 SMART REC_2 18 130 IPR001789 GO:0000160
Vra5g1249 670 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 201 260 IPR017930 -
Vra5g1249 670 Pfam Response regulator receiver domain 20 128 IPR001789 GO:0000160
Vra5g1249 670 ProSiteProfiles Response regulatory domain profile. 19 134 IPR001789 GO:0000160
Vra5g1249 670 Pfam Myb-like DNA-binding domain 206 256 IPR001005 -
Vra5g1249 670 SUPERFAMILY CheY-like 17 141 IPR011006 -
Vra5g1249 670 PIRSF RR_ARR_type-B 1 667 IPR017053 GO:0003677|GO:0003700|GO:0009736
Vra5g1249 670 Gene3D - 17 153 - -
Vra5g1249 670 Gene3D - 200 263 - -
Vra5g1249 670 PANTHER TWO-COMPONENT RESPONSE REGULATOR ARR10 1 645 - -
Vra5g1249 670 Coils Coil 172 192 - -
Vra5g1249 670 PANTHER TWO-COMPONENT RESPONSE REGULATOR 1 645 IPR045279 GO:0009736
Vra5g1249 670 MobiDBLite consensus disorder prediction 141 206 - -
Vra5g1249 670 SUPERFAMILY Homeodomain-like 201 261 IPR009057 -
Vra5g1249 670 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 204 257 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1249 Vra-Chr5 18903242 18907979 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g1249 1 378 Response Regulator Gene Family AT2G25180 58.333 5.18e-132 400
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Vra5g1249 Response_reg 4.6e-24 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1249 - K14491 gmx:100809002 1126.69