Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1248 ATGGAAACACTGAGCTACCAGGCTCCCTTCTGTGATAGCCTTTCTGCTGGAGTGACTCCTTCAAGTCATAGCACACCATTGCAGAATCCACAGGAGAAGAAACTTGAGGAAGAAGAAGAGAAAAAAGGAGATACTTTACTGGATCTAAATGTCCCTGGTGATGATTCTGCTACTGGGTGTAGTCCGGTGCTGAATCTCATCACCTGTCTGGAAACGGATTTGTCATCAGAAGACCCCCATGAGCCAAGAGTGTTTTCTTGTAACTACTGTCAGAGGAAGTTCTACAGTTCACAAGCTCTTGGTGGACACCAAAATGCTCACAAAAGAGAAAGGTCCATAGCAAAGAAAAGTCACAGATCAGTATCATCCATGGTGGCCCCAGCAACAGATTTTGGAATTCCTTTTCCTCACTATCCCACTGTGGCTTCTCTGCCTCTCCATGGTGCTTGTGGTAATAAACCACTTGGAATTCAGACTCACTGCATGATTCATAGGCCTCCTCCTCTTCTTTCTCCTCACTTCTCATTCAATGGTTTTTCAAACACTTTTGGACATCATCATGGGTGGTCAAGACCCCTTATTACTCAACAACCTGGGATAGGGAAGTTAACTATGGAAAGTTGTCGCAAAACATCACGAGACAACGTTGGCAGATTACAACTCAAGTCAGCAGGTAATGAAGAAATAAGTGAATATCTGGTTAGTGGAAATACTGGTCAAGAGAAAAAGAAACACCTTGACTTGTCCCTAAAGCTCTAA 759 0.4361 METLSYQAPFCDSLSAGVTPSSHSTPLQNPQEKKLEEEEEKKGDTLLDLNVPGDDSATGCSPVLNLITCLETDLSSEDPHEPRVFSCNYCQRKFYSSQALGGHQNAHKRERSIAKKSHRSVSSMVAPATDFGIPFPHYPTVASLPLHGACGNKPLGIQTHCMIHRPPPLLSPHFSFNGFSNTFGHHHGWSRPLITQQPGIGKLTMESCRKTSRDNVGRLQLKSAGNEEISEYLVSGNTGQEKKKHLDLSLKL* 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1248 252 ProSitePatterns Zinc finger C2H2 type domain signature. 87 107 IPR013087 -
Vra5g1248 252 Gene3D Classic Zinc Finger 70 130 - -
Vra5g1248 252 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 10 252 IPR044246 GO:0009788
Vra5g1248 252 MobiDBLite consensus disorder prediction 1 42 - -
Vra5g1248 252 SUPERFAMILY beta-beta-alpha zinc fingers 82 113 IPR036236 -
Vra5g1248 252 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 10 252 - -
Vra5g1248 252 MobiDBLite consensus disorder prediction 1 29 - -
Vra5g1248 252 ProSiteProfiles Zinc finger C2H2 type domain profile. 85 112 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1248 Vra-Chr5 18884092 18885035 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g1248 31 252 C2H2 Transcription Factor Family AT5G10970 38.462 2.62e-40 138
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vra5g1248 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1248 - - vra:106761491 511.146