Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1245 ATGGCTAGATCACAACAGCGATACCGAGGTGTCCGACAAAGGCATTGGGGCTCTTGGGTCTCTGAAATTCGACACCCCATATTAAAAACTAGGATATGGCTAGGAACTTTTGAAACTGCTGAGGATGCAGCAAGAGCCTATGATGAAGCAGCAAGGCTAATGTGCGGCACAAGGGCAAGAACAAATTTCCCTTACAACCCAAATGCATCTCAGTCATCATCTTCGAAGCTTCTATCAGCAACTTTAACTGCAAAACTGCATAGGTGCTACATGGCTTCTTTGCAAATGACAAGGCCATCATCACTACCAGAGCCTCAGAGAGTGGCTTCACCAAACGTCATCACCTCTGCAAGTAACTTCTCCATAAAGAATAACGAAACTAAGACAATGTTGCCACAGAAGAGAGAACAGGAGGAACAAGAAGTGGAGGAGAATTGGGTTTTGAAGAAGGTTAAGGTGGAAAGGACTCAGCAGTTCAAGCCTCTTGAAGAGGATCACATTGAACAAATGATAGAGGAGTTGCTGCATTATGGCACTATTGAGCTTTGCTCTATGATTCCCCACCATAGGCTCTTTTAA 579 0.4439 MARSQQRYRGVRQRHWGSWVSEIRHPILKTRIWLGTFETAEDAARAYDEAARLMCGTRARTNFPYNPNASQSSSSKLLSATLTAKLHRCYMASLQMTRPSSLPEPQRVASPNVITSASNFSIKNNETKTMLPQKREQEEQEVEENWVLKKVKVERTQQFKPLEEDHIEQMIEELLHYGTIELCSMIPHHRLF* 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1245 192 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF003-LIKE 1 185 - -
Vra5g1245 192 CDD AP2 6 66 IPR001471 GO:0003700|GO:0006355
Vra5g1245 192 ProSiteProfiles AP2/ERF domain profile. 7 64 IPR001471 GO:0003700|GO:0006355
Vra5g1245 192 SMART rav1_2 7 70 IPR001471 GO:0003700|GO:0006355
Vra5g1245 192 Gene3D AP2/ERF domain 6 65 IPR036955 GO:0003700|GO:0006355
Vra5g1245 192 PRINTS Ethylene responsive element binding protein signature 8 19 IPR001471 GO:0003700|GO:0006355
Vra5g1245 192 PRINTS Ethylene responsive element binding protein signature 30 46 IPR001471 GO:0003700|GO:0006355
Vra5g1245 192 SUPERFAMILY DNA-binding domain 7 66 IPR016177 GO:0003677
Vra5g1245 192 Pfam AP2 domain 7 56 IPR001471 GO:0003700|GO:0006355
Vra5g1245 192 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 1 185 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1245 Vra-Chr5 18840821 18842073 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g1245 1 191 AP2-EREBP Transcription Factor Family AT5G25190 64.921 5.49e-79 231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vra5g1245 AP2 6.3e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1245 - - gmx:100804510 310.457