Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1243 ATGAAAAAGAACCTTCGTTTTGTGTTTATTCTTCTTCTGCACTACGTTGCTGCTGCAGACCCTCCTGCTTCCTCTCCTCAACTTCCACCTCATTTCTCTCCAGGGGAGGAGCAGCATCACCTGCACAAGAAAATGCTAGTAGCTATTGTCGTAGCCACCATTTCACTTGCTGCACTCATTTTCGGTTTCTTATGTTTCTGGATTTATCACACTAAGTGTCCAACAAAATCCAAAACCAAAAAGGTTCAAACTCCTGGTCCAGATGCAGAGAGGGGGATCACCCTTGTACCTTTTCTGAGCAGATTCAGTTCCATCAAAATTGTTGGTATGAAGGAGTCTGTGCCGATAGTTGATTATAAGCAAATAGAAAAAATGACCAATAATTTTCAGGAAAGTAACATCTTGGGCGAGGGTGGTTTTGGATGTGTTTACAAGGCTCGGTTGGATCATAATCTGGATGTTGCAGTAAAAAAACTACACTGTGAGACTCAACATGCGGAAAGAGAATTCGAGAACGAGGTGAAGTTGTTAAGCAAAATTCAGCATCCGAATATAATCTCCTTACTGGGGTGTAGCGTCGATGGTGACACGAGGTTTATTGTTTATGAGTTGATGCAAAATGGATCATTGGAAGCTCTTTTACATGGACCTACTCATGGCTCGGCATTGACATGGCACATGAGGATGAAGATTGCTCTTGACACAGCAAGAGGACTGGAATATCTGCATGAGCACTGCTACCCTGCAGTGATCCACAGAGACATGAAATCTTCCAATATTCTCTTAGATGCAAACTTCAATGCCAAGCTGTCTGATTTTGGTCTTGCCATAACTGATGGGTCCCAAAGCAAGAAGAACATTAAACTATCGGGTACGTTAGGATATGTAGCACCGGAGTATCTTCTAGATGGTAAATTGAGTGATAAAAGTGATGTGTATGCTTTTGGGGTTGTGCTATTGGAGCTTCTATTAGGAAGGAAGCCAGTAGAAAAACTGGCACCGACGCAATGCCAGTCTATTGTCACATGGGCCATGCCACAGCTCACAGACAGAGCCAAGCTTCCAAACATTGTGGATCCAGTGATTAAGGACACAATGGATCATAAACACTTGTACCAGGTTGCTGCTGTAGCTGTGCTATGCGTGCAACCAGAGCCTAGTTATCGCCCTCTCATCACAGATGTTCTTCACTCACTTATCCCTCTTGTTCCCATTGAGCTCGGAGGAACACTGAGAGTTTCGCAAGTGAGGCAGCATACCTCTCTTGCTGTGAATTCCCGTCATTGA 1287 0.439 MKKNLRFVFILLLHYVAAADPPASSPQLPPHFSPGEEQHHLHKKMLVAIVVATISLAALIFGFLCFWIYHTKCPTKSKTKKVQTPGPDAERGITLVPFLSRFSSIKIVGMKESVPIVDYKQIEKMTNNFQESNILGEGGFGCVYKARLDHNLDVAVKKLHCETQHAEREFENEVKLLSKIQHPNIISLLGCSVDGDTRFIVYELMQNGSLEALLHGPTHGSALTWHMRMKIALDTARGLEYLHEHCYPAVIHRDMKSSNILLDANFNAKLSDFGLAITDGSQSKKNIKLSGTLGYVAPEYLLDGKLSDKSDVYAFGVVLLELLLGRKPVEKLAPTQCQSIVTWAMPQLTDRAKLPNIVDPVIKDTMDHKHLYQVAAVAVLCVQPEPSYRPLITDVLHSLIPLVPIELGGTLRVSQVRQHTSLAVNSRH* 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1243 428 ProSiteProfiles Protein kinase domain profile. 129 400 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra5g1243 428 SUPERFAMILY Protein kinase-like (PK-like) 107 399 IPR011009 -
Vra5g1243 428 Gene3D Transferase(Phosphotransferase) domain 1 205 404 - -
Vra5g1243 428 ProSitePatterns Protein kinases ATP-binding region signature. 135 158 IPR017441 GO:0005524
Vra5g1243 428 Gene3D Phosphorylase Kinase; domain 1 98 204 - -
Vra5g1243 428 CDD STKc_IRAK 135 402 - -
Vra5g1243 428 ProSitePatterns Serine/Threonine protein kinases active-site signature. 250 262 IPR008271 GO:0004672|GO:0006468
Vra5g1243 428 Pfam Protein kinase domain 129 397 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra5g1243 428 PANTHER OS01G0750732 PROTEIN 28 420 - -
Vra5g1243 428 PANTHER BNAA04G14780D PROTEIN 28 420 - -
Vra5g1243 428 SMART serkin_6 129 400 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1243 Vra-Chr5 18822871 18826422 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g1243 36 403 Receptor kinase-like Gene Family AT3G58690 42.819 1.20e-94 288
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-X Vra5g1243 Pkinase 1.2e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1243 - - gmx:100784795 707.597