Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1238 ATGGATCAAGATAGAGGTGAGGTATTGGATCCGGTTCATGACAAGAGTTTAAGTCATTTGGTTGAACGGGTTGCAATTGCTAGCGATAGTATAAGTGAAGAAGCTGGAACTTCGAGACGGGTCGATGCGAATTCAGGATCTGATAAGGAGCTAAAGGAGGAAGTTAAGGGCCAAGACAAGCATGGTCGAGAAAGTTTCAGTGATAAGTTACCTGGAGTTGATCAGGGAACTAGTTGTAATTCAAACCATTTGGTTAATCAAGAAGTGATTGAAAGTGTGATTGTGATTGAGTCTATTCGGACTGAGTACAGGAATGAAGATAATAGGAAATTGGAAGTAAAAGTTGAGGAACCGGGGTTGAGCTTGGGGTCCATGAAAGCAGCAAAAGAGGTGTCTGAAACTGATAAAAGTTCATGTGTGATTGATATAAAGTGCAGCAGCCACAAAAAGTTATATGACAATTCTGAAGGTGAAACAATTTGTAGGATTTGCCATCTGACTTCTGGTCAATCACCGGATGTAACAATTGTTGGCACTGCTAATAGTGCTACAAGAGTAGATTTGATTCAACTTGGTTGTGCATGTAAAGATGAACTAGGCATCGCGCACGTTCACTGTGCTGAGGCGTGGTTCAAGCTCAAGGGGAACAGGTTATGTGAAATATGCGGAGAGCCTGCAAAAAATGTTTCAGGTGTTAGCAGAAATGGGTTTATAGAAGAGTGGAATGAAAGAAGATTCATGGACAACGATGGTAATTCATCCCCACGAGTTGTTGGATGCTGGCGAGGACAGCCATTTTGTAACTTCTTGATGGCATGCCTGGTGATAGCTTTTGTTCTGCCGTGGTTTTTTCGTGTAAATATGTTCTAG 870 0.4184 MDQDRGEVLDPVHDKSLSHLVERVAIASDSISEEAGTSRRVDANSGSDKELKEEVKGQDKHGRESFSDKLPGVDQGTSCNSNHLVNQEVIESVIVIESIRTEYRNEDNRKLEVKVEEPGLSLGSMKAAKEVSETDKSSCVIDIKCSSHKKLYDNSEGETICRICHLTSGQSPDVTIVGTANSATRVDLIQLGCACKDELGIAHVHCAEAWFKLKGNRLCEICGEPAKNVSGVSRNGFIEEWNERRFMDNDGNSSPRVVGCWRGQPFCNFLMACLVIAFVLPWFFRVNMF* 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1238 289 PANTHER ZINC FINGER, RING-CH-TYPE 48 289 - -
Vra5g1238 289 SUPERFAMILY RING/U-box 156 225 - -
Vra5g1238 289 MobiDBLite consensus disorder prediction 43 68 - -
Vra5g1238 289 ProSiteProfiles Zinc finger RING-CH-type profile. 153 229 IPR011016 GO:0008270
Vra5g1238 289 Pfam RING-variant domain 161 222 IPR011016 GO:0008270
Vra5g1238 289 PANTHER E3 UBIQUITIN-PROTEIN LIGASE MARCH-RELATED 48 289 - -
Vra5g1238 289 SMART ringv_2 160 223 IPR011016 GO:0008270
Vra5g1238 289 MobiDBLite consensus disorder prediction 31 74 - -
Vra5g1238 289 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 144 234 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1238 Vra-Chr5 18772435 18775482 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g1238 117 288 C3H Transcription Factor Family AT5G05830 38.043 6.22e-31 113
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1238 - - gmx:100776373 440.269