Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1235 ATGGCTTACCACAACCCTCAAGACCTTCCACTCCACCATTTCACTGACCAACAACAACACCATAACCAAACTCTCACTGACGCATCTCTCCTCTCCGACCCTACCTCCAAACCTCCCTCTGATCCTCACCAACCAGCGCCAAATTGGCTCAATAACGCCCTTCTCCGCACGCACTACACCAACAGCACCACCACAAACAACAATAATGACAACAGCAACTCCGACACCAACGTTAACGCTGCCAACAACAGCGGCACCAACTTCCTCAACCTCCACACTGCGGCTACTGACTCTGGCCAATGGCTGGCGCGTCCGATCCTCCACCGCAACCAGAGCGAGATCATCGACGATGTCACGGCAGCAGGCGACTCTGCCATGACCGGCGCCGGATCCGGCGATTTGAAGAGCGAGGCGGCAGCAGTGGAGGGCGGTGGAGACGGCCTGATGAACTGGCAGAATGCGAGGTTTAAGGCGGAGATTCTATCGCATCCTCTGTATGAACAGCTTCTGTCGGCACACGTGGCATGCCTTCGGATCGCCACACCGGTGGACCAGTTGCCCAGGATAGACGCTCAGCTCGCACAGTCCCAGAATGTGCTCGCCAAGTACTCTGCTTTCGGACAAGCCATTGGGGATGACAAGGAACTCGATCAGTTCTTGTCCTCCTATGTTCTGTTGCTCTGTTCTTTCAAAGAACAGCTCCAACAACATGTCAGGGTCCATGCAATGGAAGCAGTAATGGCTTGTTGGGAGATTGAGCAATCCTTACAAAGTTTAACAGGAGTTTCACCCGGGGAAGGTACGGGAGCAACAATGTCTGATGACGAAGATGAGCAAGTAGACAGTGATGCCAATCTGTTTGATGGTGGTTTGGATGGTCCCGATAGCATGGGATTCGGTCCTCTTATTCCCACAGAGAACGAGAGGTCCCTCATGGAACGTGTAAGACATGAATTGAAGCACGAATTGAAACAGGGTTATAAAGAGAAAATTGTGGACATAAGAGAGGAAATTTTACGCAAGAGACGAGCTGGGAAACTTCCTGGTGACACCACCTCTGTCCTTAAAGCTTGGTGGCAATCACATTCCAAGTGGCCTTACCCTACAGAGGAGGATAAGGCTAGGTTGGTGCAGGAAACGGGGTTGCAGCTAAAGCAGATCAATAATTGGTTTATCAATCAAAGGAAGAGGAACTGGCACAGCAATCCCTCAACTTCCACAGTGTTGAAGAGCAAGCGCAAAAGCAATGCAGGTGATAATAGTACTGATCATCACATGTAA 1281 0.5098 MAYHNPQDLPLHHFTDQQQHHNQTLTDASLLSDPTSKPPSDPHQPAPNWLNNALLRTHYTNSTTTNNNNDNSNSDTNVNAANNSGTNFLNLHTAATDSGQWLARPILHRNQSEIIDDVTAAGDSAMTGAGSGDLKSEAAAVEGGGDGLMNWQNARFKAEILSHPLYEQLLSAHVACLRIATPVDQLPRIDAQLAQSQNVLAKYSAFGQAIGDDKELDQFLSSYVLLLCSFKEQLQQHVRVHAMEAVMACWEIEQSLQSLTGVSPGEGTGATMSDDEDEQVDSDANLFDGGLDGPDSMGFGPLIPTENERSLMERVRHELKHELKQGYKEKIVDIREEILRKRRAGKLPGDTTSVLKAWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSNPSTSTVLKSKRKSNAGDNSTDHHM* 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1235 426 Pfam ELK domain 318 339 IPR005539 GO:0003677
Vra5g1235 426 ProSiteProfiles ELK domain profile. 318 338 IPR005539 GO:0003677
Vra5g1235 426 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 35 415 - -
Vra5g1235 426 CDD homeodomain 341 402 IPR001356 GO:0003677
Vra5g1235 426 MobiDBLite consensus disorder prediction 401 426 - -
Vra5g1235 426 SMART KNOX2_2 206 261 IPR005541 GO:0003677|GO:0005634
Vra5g1235 426 SUPERFAMILY Homeodomain-like 340 403 IPR009057 -
Vra5g1235 426 SMART HOX_1 340 405 IPR001356 GO:0003677
Vra5g1235 426 Pfam KNOX2 domain 210 260 IPR005541 GO:0003677|GO:0005634
Vra5g1235 426 MobiDBLite consensus disorder prediction 46 81 - -
Vra5g1235 426 Pfam Homeobox KN domain 358 397 IPR008422 GO:0003677|GO:0006355
Vra5g1235 426 SMART KNOX1_2 154 198 IPR005540 GO:0003677|GO:0005634
Vra5g1235 426 MobiDBLite consensus disorder prediction 401 415 - -
Vra5g1235 426 Pfam KNOX1 domain 157 197 IPR005540 GO:0003677|GO:0005634
Vra5g1235 426 Gene3D - 339 400 - -
Vra5g1235 426 PANTHER CLASS II KNOTTED-LIKE HOMEOBOX PROTEIN 35 415 - -
Vra5g1235 426 MobiDBLite consensus disorder prediction 29 81 - -
Vra5g1235 426 MobiDBLite consensus disorder prediction 261 280 - -
Vra5g1235 426 ProSiteProfiles 'Homeobox' domain profile. 338 401 IPR001356 GO:0003677
Vra5g1235 426 SMART ELK_2 318 339 IPR005539 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1235 Vra-Chr5 18725203 18728946 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g1235 1 414 Homeobox Transcription Factor Family AT5G25220 65.410 0.0 540
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Vra5g1235 KNOX2 2.3e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1235 - - gmx:100790048 737.258