Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1229 ATGGGAAAGCCCTCAGGGAAGAAGAAGGGTATCGCTACTCCGGCTCCTGCAAATTCACATGCCAAACCTGCCAAGTCCTCAAAGGCTTTCGATGAAGATACAGCAATGTTCATTAACATGTCACAAGAGTTCAGAGAAGAAGGTAACAAGTTGTTTCAGAAGAAGGATCACGAAGGCGCCATGCTCAAGTACGAGAAGGCACTGAAGCTGCTTCCCAAGAACCACATAGATGTCGCACACCTTCATACCAACATGGCCACGTGTTACATGCAATTGGGTCTCGGGGAATACCCTCGAGCCATTCACGAATGCAATTTGGCGCTGGATGTGTCTCCAAGGTACAGCAAAGCTCTTCTGAAAAGAGCCACGTGCTATCGTGAGCTTAATCGCTTGGATTTGGCGCTAAGGGATGTTAATCTTGTTTTGAGCATGGAGCCGAATAACCTCACCGCGTTGGAGCTTCTCGAGAGTCTCACGAAGTCAACGGAAGAAAAGGGGGTCTCTGTTGATGATAAAAGGGTGGCTTTTGATACCACCGTTTATCACTCTCCTTCTCCTTCTTCGCAAAAACTGAAGAAGAAGAGAGGTAAAAAAATTGAGGACAAGGTGGTTGTGGAGGAAAAGTTGGGTGTCATTGTTGAGGATAAAAAGGTGGTTTCCGAACCAATTGGCCAAGAAGGCAAGGTGGTTTCCAAAACAATAGGGCAAGAAGGCAAGGTGGTTTCAAAAACAATTGGGCAAGTAAAAGAGTTGGATTCAAAAACAATTGAGCAAGAAAAAAAGGTGGTGGAAATCAAACCTGTGGAGGAAGAAAAAACTGTCACGATCACAAGGAGCGTGAAGTTGGTGTTTGGAGAAGATATAAGGTGGGCTCAGTTACCCGTGAATTGTAGCGCGAAGTTGGTGAGGGATATAGCTAGGAACCGGTTTCCAGGTTTGAAGGGAGTTCTTGTCAAGTATAAGGATAAAGAAGGTGATTTGGTTACTATCACTACTACAGATGAACTAAGGTTAGCTGAAAAGTCTGCTCCTGAGAAGGGATCGTTTAGGCTTTATATTTCTGAGGTCAGTCCAGATCAAGAACCTTCTTATGATGGAACTACAACCAATGGGAATGAGGTGCAAAGGGATGGTGGAAATCAAAATGATGGTTTTGAGAATAGGGGTACGGAAGAAGGCAGAGATGAAGATGCTGCAAAAAGGATGATTACTGTGGAGGACTGGCTTCTCCAGTTTGCAAGGCTGTTCAAGAACCATGTAGGGTTTGAGTCTGATTCTTATCTAGATACTCATGAGTTTGCAATGAAGCTGTACGGAGAAGCGATGGAAGATACGGTAGCAAGCAATGATGCTCAAGAACTTTTTGGAATTGCTGCTGATAAATTTCAAGAGATGGCTGCCTTGGCACTGTTTAATTGGGGAAGTGTTCAGATGTCCAGGGCAAGGAACCAAGGTTTCTTTTCGGAGGATGGGGCTAGAGAATCTTCCTTGGAGCATATAAAAGCTGCATATGAGTTGGCAAAAAAGGAGTACGAGAAAGCAGAATTGAGATATGAAGAAGCCTTGAAAATCAAACCTGACTTCTACGAAGGATATCTTGCTCTTGGGCATCAGCAGTTTGAGCAAGCAAGGCTGTGCTGGTGTTATGCATTGGCATGCAAGGACTCAAATGCTGGCTTTTCTGAGGAGGTTCTACAACTTTATAACAAGGCAGAGGATAGCATGGAGAAAGGCATCTTGATGTGGGAGGAGGTTGAGGAGCAGCGTTTGAATGGAATATCCAAATCAGATAAATATAAAGAACAGTTAGAGAAAATGGGCTTGGATGGTCTTTTCAAAGATGTTTCTGATGATGAAGCTTCAAAGCAAGCTGCAAAGATGAGATCTCAGATACACCTTCTATGGGGAACCTTGTTGTATGAACGTTCTGTTGTGGAATATAAGCTTGGCCTTCCCACATGGGAGGAATGTTTGGAGGTTGCTGTAGAAAAATTTGAACTAGCTGGAACTTCTGGAACAGATATTGCTTTCATTGTAAAGAATCACTGCTCAAATGAAACAGCGCTTGAAGGGTTCAAAATTGATGAGATAGTACAGGCATGGAATGAGATGTACGATGCTCAGGGGTGGCAGTTTGGTGATCCATCATTTCGACTTGAACCATTGTTTCGTCGGCGTGTTCCTAAACTCCATTCCATATTGGAGCAGTTTTAA 2214 0.4377 MGKPSGKKKGIATPAPANSHAKPAKSSKAFDEDTAMFINMSQEFREEGNKLFQKKDHEGAMLKYEKALKLLPKNHIDVAHLHTNMATCYMQLGLGEYPRAIHECNLALDVSPRYSKALLKRATCYRELNRLDLALRDVNLVLSMEPNNLTALELLESLTKSTEEKGVSVDDKRVAFDTTVYHSPSPSSQKLKKKRGKKIEDKVVVEEKLGVIVEDKKVVSEPIGQEGKVVSKTIGQEGKVVSKTIGQVKELDSKTIEQEKKVVEIKPVEEEKTVTITRSVKLVFGEDIRWAQLPVNCSAKLVRDIARNRFPGLKGVLVKYKDKEGDLVTITTTDELRLAEKSAPEKGSFRLYISEVSPDQEPSYDGTTTNGNEVQRDGGNQNDGFENRGTEEGRDEDAAKRMITVEDWLLQFARLFKNHVGFESDSYLDTHEFAMKLYGEAMEDTVASNDAQELFGIAADKFQEMAALALFNWGSVQMSRARNQGFFSEDGARESSLEHIKAAYELAKKEYEKAELRYEEALKIKPDFYEGYLALGHQQFEQARLCWCYALACKDSNAGFSEEVLQLYNKAEDSMEKGILMWEEVEEQRLNGISKSDKYKEQLEKMGLDGLFKDVSDDEASKQAAKMRSQIHLLWGTLLYERSVVEYKLGLPTWEECLEVAVEKFELAGTSGTDIAFIVKNHCSNETALEGFKIDEIVQAWNEMYDAQGWQFGDPSFRLEPLFRRRVPKLHSILEQF* 738
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1229 737 MobiDBLite consensus disorder prediction 358 397 - -
Vra5g1229 737 PANTHER PROTEIN CLMP1 1 736 IPR044517 -
Vra5g1229 737 CDD PB1 280 353 - -
Vra5g1229 737 Pfam PB1 domain 277 354 IPR000270 GO:0005515
Vra5g1229 737 SUPERFAMILY TPR-like 32 156 IPR011990 GO:0005515
Vra5g1229 737 Gene3D - 263 356 - -
Vra5g1229 737 Coils Coil 497 524 - -
Vra5g1229 737 ProSiteProfiles TPR repeat profile. 41 74 IPR019734 GO:0005515
Vra5g1229 737 ProSiteProfiles PB1 domain profile. 277 356 IPR000270 GO:0005515
Vra5g1229 737 PANTHER PROTEIN PHOX4 1 736 - -
Vra5g1229 737 Gene3D Tetratricopeptide repeat domain 38 166 IPR011990 GO:0005515
Vra5g1229 737 SUPERFAMILY TPR-like 466 630 IPR011990 GO:0005515
Vra5g1229 737 ProSiteProfiles TPR repeat profile. 115 148 IPR019734 GO:0005515
Vra5g1229 737 SUPERFAMILY CAD & PB1 domains 276 365 - -
Vra5g1229 737 SMART tpr_5 79 114 IPR019734 GO:0005515
Vra5g1229 737 SMART tpr_5 41 74 IPR019734 GO:0005515
Vra5g1229 737 SMART tpr_5 495 528 IPR019734 GO:0005515
Vra5g1229 737 SMART tpr_5 115 148 IPR019734 GO:0005515
Vra5g1229 737 MobiDBLite consensus disorder prediction 360 386 - -
Vra5g1229 737 SMART PB1_new 277 356 IPR000270 GO:0005515
Vra5g1229 737 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1229 Vra-Chr5 18670040 18672821 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g1229 25 148 Calmodulin-binding Proteins AT3G25230 30.827 1.14e-09 59.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1229 - - gmx:100805760 1158.67