Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1217 ATGGCGCAAGATATTGGTACTCCACCAGTTCCTTTTGATTTTGAACTCTTGGTTGGTGATCCTGAGAACCTTAGAACTGTCAAAGCCTCATCCAGCAGCACAGACCCATGGATTGAACCTGAAAGGTTAAAACTTAGACACAGGATTGGTCGGGGACCCTTTGGCGATGTTTGGTTAGCAACTCATCATCAGTCAACTGAAGATTATGATGAGTATCATGAAGTTGCTGCAAAGATGCTACCCCCTATCAGAGAGGAACATATGAAGACTGCATTAGAGAAATTTTTTGAGTTATATTTTCAGTGCCAAGGAGCGGCTAGGGTGTTTTGGCTACTTGGGATTTCAATTTTAAATGGAAGGATATGCATCATTATGAATTTTTATGAGGGATCGGTTGGTGATAAGATGGCTAAACTCAGAGAGGGAAGGATTTCATTGCCTGATGTTCTTAGGTATGGTATCGATCTGGCTCAAGGTATTCTTGAACTTCACTCAAAAGGGATCCTAGTTCTCAACCTTAAACCATCCAACGTACTTCTCGATGATACTGATCAAGCAATACTGGGAGATGCTGGTATTCCAAATATTCTCTTTGGTTCCTCATTCCTAAGCTCAGATACTGCCAATAGGCTTGGTACTCCAAATTACATGGCTCCAGAACAATGGCAACCAGAAGTCAGAGGCCCTGTATCCTTTGAAACAGATTCATGGGGGTTTGGGTGCACTATTGTGGAAATGTTGATTGGTAACCAACCTTGGTATGGGTGTCCTGTTGGTGAAATATATCGATCAGTTGTTGAAAAGTATGAAAAACCCCAGATTCCTGGTGGCCTTCCTTCTTCAGTTGAAAATGTCCTCAGTGGCTGCTTTGAATATGACTTGAGGAATCGCCCTTCAATGGTAGATATTCTGTCTGTCTTTAGAAGCGCAAGGAATGCAGTGGTCAATGATGGAGGATGGAAATATCTTGGAATTCACAAAACATTAGCAAAATCAAGTAGCACGGGCTACACACAGTGGTCCCTCTCAAAGGATCATCTTCAGGTGGGTGATACCGTGCGCTCTAGAAAGCCTTCCAATTCATGCAATCCACAGAACATGGAGGTCCCAGAAGGAAATGTTGTCGGCAATGCAGATCATGGATTTGTTTTAGTGAGGCTCCATGGAGTTCATGACCCTGTAAGGATTCATGCATCAACTCTTGAACGTGTCACCAATGGTTTAGGAGCCGGGGATTGGGTGCGCATTAAGGAAGAAGATGATAAACACTCGCCAGTGGGTATTCTTCATTCTATCAATCGTGAGGGCAGAGTGAGTGTTGGATTTATAGGCCTACGAACTCTTTGGAAAGGAAACTGTTCAGAACTTGAAATGGCAGAGTCTTACTGTGTGGGGCTATTTATTAGGCTGAAACCCAATATTCTAAGTCCCCGGTTTGAATGGTTGCGTAGAAGGGGAGGTACCTGGGCTACTGGTAAGATTTCTCGGATCCTACCAAATGGATGTCTGGTTGTCAACTTCCCAGGCATGTTGAACATTTGGAATGCACCAAACACTTATTTGGCTGATCCCTCTGAGGTTGATGTGGTTAGTTTTAAGAATTGTCCAAATATGATAGAAAAGTATCAACATGTTGAGGATCACCACTGGGCAATTAGACCTGTTCTAATTGCATTTGGCCTTCTTAGCACTGTTAAAATAGGGATGTCAATTGGAAAAAGAATTGGCAGGAACATGAATGTGAATGCAATGGAGAATGAAAATCATTATACTGATAGCCAGAATGCTAGCAGCCCTACATCTACATGGACATCTTCAGTAGCTAACATCCTTTTCAGAGAAGGTAGTTAA 1851 0.4263 MAQDIGTPPVPFDFELLVGDPENLRTVKASSSSTDPWIEPERLKLRHRIGRGPFGDVWLATHHQSTEDYDEYHEVAAKMLPPIREEHMKTALEKFFELYFQCQGAARVFWLLGISILNGRICIIMNFYEGSVGDKMAKLREGRISLPDVLRYGIDLAQGILELHSKGILVLNLKPSNVLLDDTDQAILGDAGIPNILFGSSFLSSDTANRLGTPNYMAPEQWQPEVRGPVSFETDSWGFGCTIVEMLIGNQPWYGCPVGEIYRSVVEKYEKPQIPGGLPSSVENVLSGCFEYDLRNRPSMVDILSVFRSARNAVVNDGGWKYLGIHKTLAKSSSTGYTQWSLSKDHLQVGDTVRSRKPSNSCNPQNMEVPEGNVVGNADHGFVLVRLHGVHDPVRIHASTLERVTNGLGAGDWVRIKEEDDKHSPVGILHSINREGRVSVGFIGLRTLWKGNCSELEMAESYCVGLFIRLKPNILSPRFEWLRRRGGTWATGKISRILPNGCLVVNFPGMLNIWNAPNTYLADPSEVDVVSFKNCPNMIEKYQHVEDHHWAIRPVLIAFGLLSTVKIGMSIGKRIGRNMNVNAMENENHYTDSQNASSPTSTWTSSVANILFREGS* 617
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1217 616 Gene3D Transferase(Phosphotransferase) domain 1 129 336 - -
Vra5g1217 616 Gene3D Phosphorylase Kinase; domain 1 20 128 - -
Vra5g1217 616 PANTHER OS06G0639500 PROTEIN 7 615 - -
Vra5g1217 616 Pfam Protein tyrosine and serine/threonine kinase 43 305 IPR001245 GO:0004672|GO:0006468
Vra5g1217 616 SUPERFAMILY Protein kinase-like (PK-like) 40 308 IPR011009 -
Vra5g1217 616 CDD STKc_PknB_like 44 309 - -
Vra5g1217 616 PANTHER OS06G0639500 PROTEIN 7 615 - -
Vra5g1217 616 ProSiteProfiles Protein kinase domain profile. 43 315 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1217 Vra-Chr5 18546823 18550875 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g1217 27 314 MAP Kinase Kinase Kinase AT2G17700 25.000 3.63e-20 92.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-1 Vra5g1217 PK_Tyr_Ser-Thr 2.8e-31 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1217 - - gmx:100780636 1117.83
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g1217 5 18546823 18550875 Vra5g1217 5 18546823 18550875 ECH