Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1213 ATGGAACTTCAGTTAGGTCTTGCTCTCCCCACTCACAACTCCGCCGAGGAATTCAAGCTCAGCAAGTCCAAACAAATAGTGAGTTCAGAGTTATGGAGACCCAGTTGCGGTTCTGAAAGTGGAAAGCATGTCAAACACAAGCGCAACTTTGAAGAATCCTTTGAACGTTTTCTGAAACCTTTCCCTTTACTAGTATGGAGTGGGCAGCCAAATGAAGAAGATGACCGTAGTCAAAAAGTGCGAAGAAACATTCACACACCCAACAAGAACCGTAGTGAAGAAAACCATTTGGTGGGGTGGCCACCAGTTAAGTCATGGAGGAGGAAAGAACTTCATCAGCATCATCCTGCAAGAGGCCAAATCAGGAACGATAGGATTCAAGCTAATGGGAATCAAAGTAGAGGACCAAACTCTTTATATGTGAAAGTTAACATGGAAGGGGTAACCATAGGAAGGAAAATCAATTTGAGGCTTTTCAACTCGTATAAAACACTTACAAACGCCTTGATCAACATGTTTGCTAAATACCAAAAATTGGAGGAGGCTGGAGAAAGTTACACACTCACCTTTCGAAACGAGCAAGGGGATTGGCTGCAAGTAGGACATGTTCCATGGCAATCATTTATAGATACAGTGCGGCGTTTGGTGCTACTGAAGAATGGAAGTGAAACTATTTGA 678 0.4292 MELQLGLALPTHNSAEEFKLSKSKQIVSSELWRPSCGSESGKHVKHKRNFEESFERFLKPFPLLVWSGQPNEEDDRSQKVRRNIHTPNKNRSEENHLVGWPPVKSWRRKELHQHHPARGQIRNDRIQANGNQSRGPNSLYVKVNMEGVTIGRKINLRLFNSYKTLTNALINMFAKYQKLEEAGESYTLTFRNEQGDWLQVGHVPWQSFIDTVRRLVLLKNGSETI* 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1213 225 SUPERFAMILY CAD & PB1 domains 133 215 - -
Vra5g1213 225 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 1 220 IPR003311 GO:0005634|GO:0006355
Vra5g1213 225 Gene3D - 134 224 - -
Vra5g1213 225 PANTHER AUXIN-RESPONSIVE PROTEIN IAA29 1 220 - -
Vra5g1213 225 Coils Coil 162 182 - -
Vra5g1213 225 MobiDBLite consensus disorder prediction 68 138 - -
Vra5g1213 225 MobiDBLite consensus disorder prediction 124 138 - -
Vra5g1213 225 ProSiteProfiles PB1 domain profile. 138 225 IPR000270 GO:0005515
Vra5g1213 225 Pfam AUX/IAA family 183 223 IPR033389 -
Vra5g1213 225 Pfam AUX/IAA family 2 177 IPR033389 -
Vra5g1213 225 MobiDBLite consensus disorder prediction 72 92 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1213 Vra-Chr5 18525534 18527318 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g1213 141 217 B3 DNA Binding Superfamily AT3G61830 29.870 1.03e-08 53.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Vra5g1213 AUX_IAA 5.4e-27 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1213 K14484 - gmx:100783359 394.045
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g1213 5 18525534 18527318 Vra5g1213 5 18525534 18527318 ECH