Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1209 ATGGGAAAAGATTGGTCTTTCTTGCATATTGTGGGCACCCTTTTCCTTTTGTGCAAAGTTTGTTTAGCTGCGAATCAATATACTGGAAGGATCTCAGCCGGGGGGATAAAGGGTTCCCAAATGAATTGGATTGACAGAAATGGCCAATTCCTCGTATCAAACGATGGACGATTTTCCTTTGGCTTTGTCACCACAGCGAATGACACCACCTTGTTTCTACTCTCAATCATCCACGTGAGAGCTTCCCGGGTCGTTTGGAGTGCTAATAGAGCAGTTCCAGTTGCTAATTCCGACAACTTTGTTTTTGATGACAAGGGCAACGCCTTCTTGCAGAAAGATGGAACCGTGGTCTGGTCCACGAACACAAGCGGCAAAGGGGTTTCTTCAATGGAATTGAGTGACACTGGGAATTTGGTTTTGCTTGGGAGTGATAATAGTACAGTGATTTGGCAAAGTTTCGGCCATCCAACAGATACTTTGCTGCCAACTCAGGAATTCACAGAGGGAATGAAACTCGTCAGTAATCCTAGCACGAACCACTTGACCCATATTCTTGAGATCAAGTCTGGTATTGTTGTTCTCTCCGCAAGTTTTCAAACTCCGCAGCCTTATTGGACTATGCAGACGGACAGCCGCAGAACCATCAACCAGGACGGCGATGAAGTGGCTTCAGCAAGCATCAGTGGAAACTCATGGAAGTTCTATGACAAGGGAAAATCGCTGTTGTCGCAATTCATTTTCTCTTCAGGTCAAGACTCAAATTCGACTTGGATTGCTGTTTTGGGGAGTGATGGCTTCATCACCTTCTCCACCCTCGGCAGTGGAGGGTCAAATGCTGCTTCTGAAACAATTCCTGAAGATTCTTGCGGTACTCCAGAACCTTGTGATGCATATTCCATATGCACGGGTAGCAAGAGGTGTAGCTGCCCTTCTGTTATTCCCAGTTGCAAACCTGGTTTTGACTCTCCTTGTGGTGGCGACTCAGGAAAATCCATTCGGTTGGTTAAAGCTGATGATGGACTCGATTACTTTGCGCTTGGTTTCCTTCAACCGTTTTCCAAAACCGATCTGGCTGGTTGCCAAACATCTTGCCGTGGAAACTGTTCTTGCCTTGCTATGTTTTTCCAGAGAAGTTCGGGGAATTGTTTCTTGTTGGACAGTGTAGGAAGCTTTCAGAAACCTGCTTCTGATCCTGGTTATGTTTCTTATATCAAGGTCTCGAGTGAAGGAGGTTCTGGCTCGGGTTCTGGGGGCGGTGGAAGTGGCAATAAGCACACCGTAGTTGTTGTGATAATTGTCTTAGTAACCTTTTTTGTCATTTGTGGTCTTGTCTTTTGGGGAGTTAGATACCAAAGAAGAAAGCAAAGGGTGCCCGAGTCTCCTTCAGATGGCTCAGAAGAGGCCAATTTCTTGGAAAATTTAACCGGTATGCCAATCCGTTACAGCTACAAGGACCTTGAAACTGCCACCAATAACTTTTCTGTGAAGCTTGGGCAAGGGGGTTTTGGGTCAGTGTATAAGGGAGTTGTAGCAGATGGAACACAAATAGCAGTGAAGAAATTGGAAAGTATTGGACAAGGAAAGAAAGAGTTCAGGGCCGAAGTTAGCATCATTGGCAGCATTCATCACCTCCATTTGGTTAGGCTAAAGGGATTCTGTGCTGATGGATCTCACAGGCTGCTTGCTTACGAGTACATGCCCAATGGCTCATTGGATAAATGGATATTCAAGAAAAACAAAGGTGAGTTTCTGTTGGATTGGGATACTAGGTTCAATATAGCTCTGGGAACAGCAAAAGGACTTGCTTATCTGCACGAAGATTGTGACTCGAAGATTGTTCATTGTGACATCAAACCAGAAAATGTTCTTCTGGACGAACACTTCATGGCAAAGGTTTCGGATTTTGGACTGGCGAAGCTCATGAATCGAGAACAAAGCCATGTTTTCACAACACTGAGGGGCACGAGGGGCTATCTTGCGCCGGAGTGGATAACAAACTACGCTATATCAGAGAAAAGTGATGTTTACAGCTACGGGATGGTGCTGTTGGAGATAATCGGAGGAAGGAAAAACTACGATCCTAGTGAGTCTTCAGAGAAATCCCATTTCCCAACTTTTGCCTTTAAAATGATGGAAGAAGGGAAGGTGAGGGATATATTTGACTCGGAGTTGAGAATCGACGAGAATGACGAGAGGTTTCAATGTGCTATAAAAGTTGCATTGTGGTGCATACAGGAAGACATGTCAATGAGGCCATCTATGAGTAGAGTTGTTCAAATGTTGGAGGGTCTTTGCACTGTTCCTAACCCACCAACCACTTCTTTCTTGGGTTCTCGCCTTTATTCCGCTGTCTTCAAATCCTCCAGTGAAGGAGCCACCACCTCTTCTGCTCCCTCAGACTGTAACAGTGATGCTTACCTCTCTGCTGTTCGTCTTTCAGGGCCTAGATAA 2451 0.4529 MGKDWSFLHIVGTLFLLCKVCLAANQYTGRISAGGIKGSQMNWIDRNGQFLVSNDGRFSFGFVTTANDTTLFLLSIIHVRASRVVWSANRAVPVANSDNFVFDDKGNAFLQKDGTVVWSTNTSGKGVSSMELSDTGNLVLLGSDNSTVIWQSFGHPTDTLLPTQEFTEGMKLVSNPSTNHLTHILEIKSGIVVLSASFQTPQPYWTMQTDSRRTINQDGDEVASASISGNSWKFYDKGKSLLSQFIFSSGQDSNSTWIAVLGSDGFITFSTLGSGGSNAASETIPEDSCGTPEPCDAYSICTGSKRCSCPSVIPSCKPGFDSPCGGDSGKSIRLVKADDGLDYFALGFLQPFSKTDLAGCQTSCRGNCSCLAMFFQRSSGNCFLLDSVGSFQKPASDPGYVSYIKVSSEGGSGSGSGGGGSGNKHTVVVVIIVLVTFFVICGLVFWGVRYQRRKQRVPESPSDGSEEANFLENLTGMPIRYSYKDLETATNNFSVKLGQGGFGSVYKGVVADGTQIAVKKLESIGQGKKEFRAEVSIIGSIHHLHLVRLKGFCADGSHRLLAYEYMPNGSLDKWIFKKNKGEFLLDWDTRFNIALGTAKGLAYLHEDCDSKIVHCDIKPENVLLDEHFMAKVSDFGLAKLMNREQSHVFTTLRGTRGYLAPEWITNYAISEKSDVYSYGMVLLEIIGGRKNYDPSESSEKSHFPTFAFKMMEEGKVRDIFDSELRIDENDERFQCAIKVALWCIQEDMSMRPSMSRVVQMLEGLCTVPNPPTTSFLGSRLYSAVFKSSSEGATTSSAPSDCNSDAYLSAVRLSGPR* 817
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1209 816 CDD PAN_AP_plant 352 406 - -
Vra5g1209 816 SMART serkin_6 491 761 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra5g1209 816 Gene3D Phosphorylase Kinase; domain 1 459 565 - -
Vra5g1209 816 ProSitePatterns Serine/Threonine protein kinases active-site signature. 612 624 IPR008271 GO:0004672|GO:0006468
Vra5g1209 816 SUPERFAMILY alpha-D-mannose-specific plant lectins 82 209 IPR036426 -
Vra5g1209 816 Pfam Protein kinase domain 495 759 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra5g1209 816 CDD B_lectin 44 156 IPR001480 -
Vra5g1209 816 ProSiteProfiles Bulb-type lectin domain profile. 36 153 IPR001480 -
Vra5g1209 816 CDD STKc_IRAK 497 764 - -
Vra5g1209 816 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 10 816 - -
Vra5g1209 816 ProSiteProfiles Protein kinase domain profile. 491 776 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra5g1209 816 Gene3D - 46 191 - -
Vra5g1209 816 Gene3D Transferase(Phosphotransferase) domain 1 566 769 - -
Vra5g1209 816 Pfam D-mannose binding lectin 84 167 IPR001480 -
Vra5g1209 816 SUPERFAMILY Protein kinase-like (PK-like) 472 762 IPR011009 -
Vra5g1209 816 PIRSF SRK 4 811 IPR024171 GO:0004674
Vra5g1209 816 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 10 816 - -
Vra5g1209 816 ProSitePatterns Protein kinases ATP-binding region signature. 497 520 IPR017441 GO:0005524
Vra5g1209 816 SMART blect_4 42 156 IPR001480 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1209 Vra-Chr5 18487514 18490821 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g1209 439 771 Receptor kinase-like Gene Family AT5G20050 46.591 2.74e-96 306
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Vra5g1209 Pkinase 6.5e-53 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1209 - - gmx:100791158 1408.66
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g1209 5 18487514 18490821 Vra5g1209 5 18487514 18490821 ECH
Vra5g1209 5 18487514 18490821 Vra6g1571 6 31065206 31068429 ECH
Vra6g1571 6 31065206 31068429 Vra5g1209 5 18487514 18490821 PCT