Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1204 ATGCCTGAGCTGCTACACGGGATTCTTAAGGTAACCATAGATGAAGTCGATAGACTGCATACTGGATGTCATTTGGATTTCTGTCAGAAGGGCACAACACACAAGGGTAAGAGATTTCTAGCCCAAGTCAAGGGTTGTCTGCTGTGCAGGCCCGAGATTGTTGGAACAAGATTGTATGCAACAGTTGATTTAGACAAGGCAAGGGTTGGACGAACGAGAATGATAGGAAACCGACCCTCAAACCCAAAGTGGAACGAGGACTTCGAAATCTACTGTGCACATCGTATCTCAAACATCATATTCACTGTCAAAGATGGTAATCCAATCGGAGCAACTCTAATCGGAAGAGCCTATGTCCCTGTGGAGCAAGTTCGTAAGCACCCCATAGTTAAGAGATGGGTTCAGATATTAGACGAAGAAGATCATCGTCCCGTGCCGGGTCATTCCAGAATCTGCGTCAGCGTGAAATTCACCAGCGTCACTCAGGACCCAACATGGTCTCAGGGAATTCGCATGCCATTTTCTGGAGTTCCTCGTACATTCTTCAATCAGAGAGAAGGTTGTCATGTTACTTTGTACCAGGATGCTCATGCCCCACGTGGCGTTGGTGTTGTCCCATACATTCCAATATCCGAAGGAAAAGACTACTTGCCCGCAAGATGTTGGGAGGACATTTACACTGCCATTATGGATGCTAAGCATCTTGTTTACATAACTGGTTGGTCTGTTTACACTGAAATAGCATTGGTTAGAGACAAAGAGGAATCAAATATCACCCTCGGGGAGTTACTTAAGAAGAAGGCTGATGAAGGTGTTAGAGTTCTTCTGCTTATTTGGAAAGACATAACTTCTGTACCAGAATTAGCCAAAGATGGCTTGATGGCAACTCATGATGAGGAAACTGCTGCTTATTTTAGAAACACAAAGGTGCATTGCGTTCTGTGTCCACGGAACCCGGATGATGGGAAAAGCATTATTCAAGGATTTCAAACATCAACTATGTTCACTCATCACCAAAAGAGTGTGGTCGTTGATGCAGGTTTTGTAGGGTCATCTCAGAAGCGAAGTTTGGTGAGTTTCATAGGTGGCCTTGATCTTTGTGACGGGAGGTATGACACCAGGGATCATCCTCTATTTTCAACTCTGAATACGGTGCATAGAAACGATTTCCATCAAACAAACTTTCCAAATGCTTCCATTGATAAAGGTGGTCCAAGAGAGCCATGGCACGACATTCATTGCAAGCTAGAAGGCCCTATTGCTTGGGATGTTCTGTACAACTTTGAGCAAAGGTGGGAGAAGCAAGTTGGGAAGGAACTGCTATTCTCGCTTGATGATCTTGATTACATTCTAGTCCACCCATCTGTCGCACAAAAATCAGAAGTGGGAGAAGAAGACACATGGAATGTTCAGCTGTTTAGATCCATAGATGGTGGTGCTGCTTTGGGCTTTCCCCAAGTCCCGAATGAAGTTGCTGAATTAGGCCTTGTTAGTGGGAAAGACAGTATGATTGAGAGAAGTATTCAGGATGCCTACATTAATGCTATTAGGCGTGCAAAAAACTTCGTTTACATCGAGAACCAATTCTTCCTAGGGAGTTCTTATGCTTGGCAAACAACTAATGACTTTGTGATTGAGAACATTGGTGCATTGCATCTTATACCAAAGGAGTTGACATTGAAGATTGTGAGCAAGATTGAAGCAAAAGAGAGGTTTTCTGTGTACATAGTGATCCCAATGTGGCCTGAAGGTGTACCTGAAACTGAGTCGGTTCAAGCAATATTAGATTGGCAGAGAAGAACCATGGAGATGATGTATTCCGACATTGCTGGTGCCTTGGCAAAATTCGGCATTCAAGCACACCCTCGAGATTATTTGACATTTTTTTGCCTTGGCAATAGGGAGCATAAGGAACCGGGAGAGTATACTCCTCCACAGGAACCAGAGGCTGAGAGTGACTACAGAAGAGCACAAAATTCTAGGAGGTTCATGATCTATGTTCATTCCAAAATGATGATAGTTGATGACGAATACATAATCGTTGGGTCTGCTAACATAAATCAAAGATCAATGGAGGGTTCAAGAGACAGTGAGATTGCAATGGGTGCATTCCAACCACGTCATCTAGCATGGAATGGAAGAGCCAGAGGGGAGATATATAGATTCCGACGTGCACTATGGTATGAGCACCTTGGGGACCATGGTTTTGACTCAAAAATCTTTGACAACCCAGAACATTTGGACTGCATAGCTCTTGTGAATAGGCTTGCCGAAGAAAACTGGGACATGTACTCAAAGGAAACATTTGATCAAGTTAGAAATTTTCACCACCTCATGCGCTACCCTATACATGTAGCCCACGATGGAACCATAACAACTCTTCCAGGGTTTGAACATTTTCCTGACACCAAAGCTCGGATTTTGGGTTCCTGTTCATATTTCCTTCCTTCAATTCTTACAACCTAA 2466 0.4363 MPELLHGILKVTIDEVDRLHTGCHLDFCQKGTTHKGKRFLAQVKGCLLCRPEIVGTRLYATVDLDKARVGRTRMIGNRPSNPKWNEDFEIYCAHRISNIIFTVKDGNPIGATLIGRAYVPVEQVRKHPIVKRWVQILDEEDHRPVPGHSRICVSVKFTSVTQDPTWSQGIRMPFSGVPRTFFNQREGCHVTLYQDAHAPRGVGVVPYIPISEGKDYLPARCWEDIYTAIMDAKHLVYITGWSVYTEIALVRDKEESNITLGELLKKKADEGVRVLLLIWKDITSVPELAKDGLMATHDEETAAYFRNTKVHCVLCPRNPDDGKSIIQGFQTSTMFTHHQKSVVVDAGFVGSSQKRSLVSFIGGLDLCDGRYDTRDHPLFSTLNTVHRNDFHQTNFPNASIDKGGPREPWHDIHCKLEGPIAWDVLYNFEQRWEKQVGKELLFSLDDLDYILVHPSVAQKSEVGEEDTWNVQLFRSIDGGAALGFPQVPNEVAELGLVSGKDSMIERSIQDAYINAIRRAKNFVYIENQFFLGSSYAWQTTNDFVIENIGALHLIPKELTLKIVSKIEAKERFSVYIVIPMWPEGVPETESVQAILDWQRRTMEMMYSDIAGALAKFGIQAHPRDYLTFFCLGNREHKEPGEYTPPQEPEAESDYRRAQNSRRFMIYVHSKMMIVDDEYIIVGSANINQRSMEGSRDSEIAMGAFQPRHLAWNGRARGEIYRFRRALWYEHLGDHGFDSKIFDNPEHLDCIALVNRLAEENWDMYSKETFDQVRNFHHLMRYPIHVAHDGTITTLPGFEHFPDTKARILGSCSYFLPSILTT* 822
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1204 821 Gene3D C2 domain 4 160 IPR035892 -
Vra5g1204 821 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 663 690 IPR001736 GO:0003824
Vra5g1204 821 Gene3D Endonuclease Chain A 488 706 - -
Vra5g1204 821 PIRSF PLD_plant 1 821 IPR011402 GO:0004630|GO:0005509|GO:0016020|GO:0046470
Vra5g1204 821 Gene3D Endonuclease Chain A 212 449 - -
Vra5g1204 821 SMART pld_4 663 690 IPR001736 GO:0003824
Vra5g1204 821 SMART pld_4 333 370 IPR001736 GO:0003824
Vra5g1204 821 Pfam C2 domain 46 135 IPR000008 -
Vra5g1204 821 PANTHER PHOSPHOLIPASE D ALPHA 3 3 821 - -
Vra5g1204 821 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 333 370 IPR001736 GO:0003824
Vra5g1204 821 SUPERFAMILY Phospholipase D/nuclease 173 444 - -
Vra5g1204 821 PANTHER PHOSPHOLIPASE D 3 821 IPR015679 -
Vra5g1204 821 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 4 159 IPR035892 -
Vra5g1204 821 CDD C2_plant_PLD 4 158 - -
Vra5g1204 821 SUPERFAMILY Phospholipase D/nuclease 496 732 - -
Vra5g1204 821 SMART C2_3c 8 133 IPR000008 -
Vra5g1204 821 Pfam Phospholipase D Active site motif 664 690 IPR001736 GO:0003824
Vra5g1204 821 Pfam Phospholipase D Active site motif 333 370 IPR001736 GO:0003824
Vra5g1204 821 Pfam Phospholipase D C terminal 739 810 IPR024632 -
Vra5g1204 821 ProSiteProfiles C2 domain profile. 1 134 IPR000008 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1204 Vra-Chr5 18447421 18451198 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g1204 4 821 Phospholipase D Gene Family (Wang group) AT3G15730 62.289 0.0 1020
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1204 K01115 - gmx:100794115 1404.04
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g1204 5 18447421 18451198 Vra5g1204 5 18447421 18451198 ECH