Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1203 ATGTCTCGTTTGCTGCATGGGACTCTCAATGTGACCATATACGAGGTTGATACACTGCCAACTCTTAACGACTGCGATTTCAATCTCTGCTGCAAGGGTACAAATCGAAGCGTGAGGAAGAGATTCCTTTCCCAACTTAAGAGTTGTCTGTTCTGTCAATGCCAGGGCCAGCCCGGGTCTACCCAAACGGGTCTGTATGCAACAATTGATTTAGATAAGGCAAGAGTTGGAAGGACTAAAGTGCTAAATGATGAACCCTCCAACCCCAGGTGGAATGAGACCTTTCGCATATACTGTGCCCATTTGATCTCCCATGTTATATTCACTGTCAAACGAAAAGACCCCATTGATGCGACTCTAATTGGAAGAGCTTATGTCCCAGTTGAACAAATCGTGAACGGTAACATAGTGGACACATGGGTCCCAATATTAGACGAGGATCGTAACCCCATTCCAAGTTCCTCAAAAATCCATGTCACAATGAAATTCTTTAATGTTTTGAATGACATAAACTGGTCTGGAGGAATAAGAAGTCCGACTTTTCAAGGAGTTCCCCACAGTTTCTTCGGTCAAAGAACTGGTTGCAACGTTGCTTTGTACCAAGATGCCCATGTTTCGGATGGTTTTCAGCCGTGGATTCCCTTGTCAGGAAGAAGGAATTATGAGTTTAGGAAATGCTGGGAGGATATTTACAGTGCCATTGTGGAGGCTAGGTACTTTATTTATATTACTGGCTGGTCTGTGTACACTGAAATATCCTTGATTAGGGACCCCATGCAGCCCAAGAGAATCACCCTTGGGGAACTTCTCAAGAGGAAAGCCGAGGAAGGTGTTAAGGTTCTTATGCTTGTTTGGGATGATAGAACATCTGTGCCAGACTTCAAGAAGGATGGCTTAATGGCAACCCATGATCAAGAAACTGCTGCTTACTTCAAAAACACGAAGGTGAATTGTGTTTTGTGTCCGCGCAACCCAGATGTTGGAAGAAGCATTGTGCAAGGTTTAGAAACTTCAACAATGTTCACTCATCACCAGAAGAGTGTAGTTGTTGATAGCCAATTTGTTGGTGCTGCGGTGGGACAACGACAAAAGAGAACAATAACAAGTTTTGTAGGTGGCATTGATCTTTGCGATGGGAGATACGATACTCAGGAACATCCTCTATTTTCAACTTTGGACACAGTGCATAAAGATGACTTCCATCAACCAAATTTCCCAGGTGCTTCCATCAAGAAAGGTGGTCCAAGAGAGCCATGGCATGATATTCACTGCAAGTTAGAAGGGAATGTTGCTTGGGATGTTTTGTTCAATTTTCAACAAAGGTGGGAGAAGCAGGTTGGGAATCAGTTCCTATTCCCTTCGAGCATGCTTAACGAATACTTTGTCCCTCGATCCACTGCGGCAACGACAAATGATAACGACACATGGAATGTTCAGTTGTTCAGATCCATTGATGGTGGTGCAGCTTCTGGCTTCCCCTCAGACCCAAAAGTTGCAGCTGAATCCGGCCTTGTTAGTGGGAACAACAACATCGTTGATAGAAGTATTCAAGATGCATATATAAATGCTATTAGAAGAGCCCAAAATTTCATCTACATTGAAAACCAATATTTCCTTGGGAGTTCATATGCCTGGCAAGCTTCTGATATAGTAGTTGAGGATATTGGTGCATTGCATCTTATACCAAAGGAGCTGTCATTGAAGATTGTTAGCAAGATTGAAGCAGGGGAAAGATTTTCTGTGTATGTTGTCATACCAATGTGGCCAGAAGGCATACCTGAGAGTGATTCAGTTCAAGCAATACTAGATTGGCAAAGGAGGACAATGGAGATGATGTATGCTGATATAGCTCAAGCCATTCAAAGAACTGGAATTGAAGCTCACCCAAGAGACTACTTGACCTTTTTCTGCCTTGGAAACCGTGAGGGTCAGAAATATAGCGAGTACACTCCTACTGAGGCACCAGAACCGGACACTGATTACAGCAGAGCACAAAAGTCTAGGCGATTCATGATCTATGTTCATGCCAAGATGATGATAGTTGATGATGAATACATAATCATTGGTTCTGCGAACATAAACCAAAGATCAATGGATGGAGCAAGAGACAGTGAGATTGCGATGGGTGCATTCCAGCCAGGACATTTAGTGTGTAATGGGCGACCCAGAGGACAGATATATGGATTTCGACGTGCACTGTGGTATGAACACCTCGGAGATGTTAATGATAGTAGCATTTTCGACGATCCTGAAAGCGAAGAATGCATGAAGCTTGTGAATCATCTTGCTGAAACCAACTGGGCTCTGTACTCTGAGCAAACGTTTTATGAGAATACAGAATTTCACCACCTCATGCGTTATCCCATAGAAGTAACCAACCATGGAGCCATAACGAACCTTCCAGGGATTCAATATTTTCCTGACACTAAGGCTCGGATTTTGGGTGCCAAATCAGATTATCTTCCTCCAATTCTCACCACTTAG 2484 0.4332 MSRLLHGTLNVTIYEVDTLPTLNDCDFNLCCKGTNRSVRKRFLSQLKSCLFCQCQGQPGSTQTGLYATIDLDKARVGRTKVLNDEPSNPRWNETFRIYCAHLISHVIFTVKRKDPIDATLIGRAYVPVEQIVNGNIVDTWVPILDEDRNPIPSSSKIHVTMKFFNVLNDINWSGGIRSPTFQGVPHSFFGQRTGCNVALYQDAHVSDGFQPWIPLSGRRNYEFRKCWEDIYSAIVEARYFIYITGWSVYTEISLIRDPMQPKRITLGELLKRKAEEGVKVLMLVWDDRTSVPDFKKDGLMATHDQETAAYFKNTKVNCVLCPRNPDVGRSIVQGLETSTMFTHHQKSVVVDSQFVGAAVGQRQKRTITSFVGGIDLCDGRYDTQEHPLFSTLDTVHKDDFHQPNFPGASIKKGGPREPWHDIHCKLEGNVAWDVLFNFQQRWEKQVGNQFLFPSSMLNEYFVPRSTAATTNDNDTWNVQLFRSIDGGAASGFPSDPKVAAESGLVSGNNNIVDRSIQDAYINAIRRAQNFIYIENQYFLGSSYAWQASDIVVEDIGALHLIPKELSLKIVSKIEAGERFSVYVVIPMWPEGIPESDSVQAILDWQRRTMEMMYADIAQAIQRTGIEAHPRDYLTFFCLGNREGQKYSEYTPTEAPEPDTDYSRAQKSRRFMIYVHAKMMIVDDEYIIIGSANINQRSMDGARDSEIAMGAFQPGHLVCNGRPRGQIYGFRRALWYEHLGDVNDSSIFDDPESEECMKLVNHLAETNWALYSEQTFYENTEFHHLMRYPIEVTNHGAITNLPGIQYFPDTKARILGAKSDYLPPILTT* 828
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1203 827 CDD C2_plant_PLD 1 164 - -
Vra5g1203 827 Pfam Phospholipase D Active site motif 339 380 IPR001736 GO:0003824
Vra5g1203 827 Pfam Phospholipase D Active site motif 671 697 IPR001736 GO:0003824
Vra5g1203 827 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 339 380 IPR001736 GO:0003824
Vra5g1203 827 Gene3D C2 domain 5 171 IPR035892 -
Vra5g1203 827 PANTHER PHOSPHOLIPASE D ALPHA 3 3 827 - -
Vra5g1203 827 PANTHER PHOSPHOLIPASE D 3 827 IPR015679 -
Vra5g1203 827 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 670 697 IPR001736 GO:0003824
Vra5g1203 827 Gene3D Endonuclease Chain A 489 710 - -
Vra5g1203 827 PIRSF PLD_plant 1 827 IPR011402 GO:0004630|GO:0005509|GO:0016020|GO:0046470
Vra5g1203 827 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 4 165 IPR035892 -
Vra5g1203 827 SMART pld_4 670 697 IPR001736 GO:0003824
Vra5g1203 827 SMART pld_4 339 380 IPR001736 GO:0003824
Vra5g1203 827 SMART C2_3c 8 140 IPR000008 -
Vra5g1203 827 SUPERFAMILY Phospholipase D/nuclease 169 451 - -
Vra5g1203 827 Gene3D Endonuclease Chain A 212 473 - -
Vra5g1203 827 SUPERFAMILY Phospholipase D/nuclease 509 740 - -
Vra5g1203 827 ProSiteProfiles C2 domain profile. 1 141 IPR000008 -
Vra5g1203 827 Pfam C2 domain 8 143 IPR000008 -
Vra5g1203 827 Pfam Phospholipase D C terminal 746 817 IPR024632 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1203 Vra-Chr5 18434422 18437794 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g1203 4 827 Phospholipase D Gene Family (Wang group) AT3G15730 63.724 0.0 1083
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1203 K01115 - gmx:100791688 1417.14