Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1202 ATGGTACAAGCCAAGAAGTTCAGAGGAGTCAGGCAACGCCAGTGGGGCTCCTGGGTGTCAGAAATTCGCCATCCTTTACTGAAGAGAAGGGTGTGGCTAGGCACGTTTGAGACAGCTGAGGCTGCTGCAAGGGCTTATGATCAAGCAGCCATTTTGATGAATGGTCAGAATGCCAAGACTAACTTCCCCAAGAACCAAGCTCAGCCTGATGCCACCACCACCCCTTCTGCTGCTTCTTCTGCTGATCATGACAACGCTTTCTTATCTCCCAAAGCTCTTTCAGAACTCCTCAGCACTAAGCTCAGAAAGTACTGCAAAGACCCTGCTCCTTCCCTCACTTGTCTCAGGCTCGATGCTGATAACTCCCACATTGGAGTCTGGCAGAAAGGTGCAGGACCACATTCTGGCTCCAATTGGGTCATGAGGGTGGAGCTTGGGAAGAAGCAGACCAAGACTGAATCAGCATGGTCGTCCGGCAGTAGTGTTAATGACACTGCTGGAAACAATGGAGGAGTAGTAGTAGAAGAAGAAGAGGAGGAGGAGGAGGAGGATAGACTCGCTTTGCAGATGATCGAGGAGCTACTCAATTGGAACTAG 597 0.5059 MVQAKKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFETAEAAARAYDQAAILMNGQNAKTNFPKNQAQPDATTTPSAASSADHDNAFLSPKALSELLSTKLRKYCKDPAPSLTCLRLDADNSHIGVWQKGAGPHSGSNWVMRVELGKKQTKTESAWSSGSSVNDTAGNNGGVVVEEEEEEEEEDRLALQMIEELLNWN* 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1202 198 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 1 198 - -
Vra5g1202 198 CDD AP2 5 63 IPR001471 GO:0003700|GO:0006355
Vra5g1202 198 Coils Coil 174 194 - -
Vra5g1202 198 MobiDBLite consensus disorder prediction 152 168 - -
Vra5g1202 198 MobiDBLite consensus disorder prediction 60 84 - -
Vra5g1202 198 Gene3D AP2/ERF domain 5 65 IPR036955 GO:0003700|GO:0006355
Vra5g1202 198 ProSiteProfiles AP2/ERF domain profile. 6 63 IPR001471 GO:0003700|GO:0006355
Vra5g1202 198 SUPERFAMILY DNA-binding domain 6 64 IPR016177 GO:0003677
Vra5g1202 198 SMART rav1_2 6 69 IPR001471 GO:0003700|GO:0006355
Vra5g1202 198 MobiDBLite consensus disorder prediction 152 184 - -
Vra5g1202 198 Pfam AP2 domain 6 55 IPR001471 GO:0003700|GO:0006355
Vra5g1202 198 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR SHINE 2 1 198 - -
Vra5g1202 198 MobiDBLite consensus disorder prediction 60 83 - -
Vra5g1202 198 PRINTS Ethylene responsive element binding protein signature 7 18 IPR001471 GO:0003700|GO:0006355
Vra5g1202 198 PRINTS Ethylene responsive element binding protein signature 29 45 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1202 Vra-Chr5 18424088 18425192 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g1202 1 197 AP2-EREBP Transcription Factor Family AT5G25390 59.391 6.03e-76 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vra5g1202 AP2 1.7e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1202 - - gmx:100806821 278.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g1202 5 18424088 18425192 Vra5g1202 5 18424088 18425192 ECH
Vra5g1202 5 18424088 18425192 Vra6g1566 6 30959838 30960782 ECH
Vra7g2254 7 42494403 42495656 Vra5g1202 5 18424088 18425192 ECH