Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1195 ATGAAGCTCTTTTCCTTCGTAATATTTTCAACCCTTTTTCTCAAACAAGGTCGCCTGGTTATTGGAGACGTTGGTACTGCTGCATCTTATGGACCACCATACATACCTACTGCTTGCGGTGGAAACAGAGCAGGGCAATTTCCTCCTGGAAATCTATTTGTAGCTGTGAATGAAGGATTATGGGATAATGGAGCAGCGTGTGGAAGGAGATACAGAATAAGGTGTGTGAGTGGAAACAACAGACCATGCAAAGGTGGTAGCATCGATGTCAAAGTGGTAGATGCTTGTCCTGGCTCACCTTGTCCCAACAGCCTCCTCATGTCAAATGATGCCTTTGCAGCTATTTCACGCTTCCCTCATGCAAAAATCAACATTGAATATACCCAGATATGA 393 0.4427 MKLFSFVIFSTLFLKQGRLVIGDVGTAASYGPPYIPTACGGNRAGQFPPGNLFVAVNEGLWDNGAACGRRYRIRCVSGNNRPCKGGSIDVKVVDACPGSPCPNSLLMSNDAFAAISRFPHAKINIEYTQI* 131
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1195 130 Pfam Lytic transglycolase 55 127 IPR009009 -
Vra5g1195 130 SUPERFAMILY Barwin-like endoglucanases 21 130 IPR036908 -
Vra5g1195 130 PANTHER RLPA-LIKE PROTEIN, DOUBLE-PSI BETA-BARREL-RELATED 2 129 - -
Vra5g1195 130 Gene3D - 23 130 IPR036908 -
Vra5g1195 130 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 36 130 IPR007112 -
Vra5g1195 130 PANTHER EG45-LIKE DOMAIN CONTAINING PROTEIN 2 129 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1195 Vra-Chr5 18339944 18340964 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g1195 30 117 Expansin Gene Family AT2G45110 33.673 1.99e-07 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1195 - - gmx:100792215 246.128
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g1195 5 18339944 18340964 Vra5g1195 5 18339944 18340964 ECH