Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1192 ATGAGTGCGGCGTTTCAGTGTTTATCGTGTGCGAGGACTGAACCTTTCCTCCTCACACCAGCCCAATCCCTCACTCTTCCTTTCCAACGAAAACCATTTTTCTGCTCTCTTCCTCTTTCCTCTCGCGCTCGTAACCTCTCTTCTTCAATCGTCGCTGCTTCTTCCAAAAAGAAAAAAAACAAGAAAAAACTGTCTCGTCATCATGTTACCGAGGGCGGCGAGGAGGATATGGACGCGTTTGAGCTTCTCTTCAACCAGCTCGAACAAGATCTCAAACGCGGTGATTTGTCAGATGATGATGGCGAAGATGGGATAACTGAAGAAGAGATGTCATTGCTTGAACGTGAGCTGGAAAATGCCTTGGGGGACTTCGATGCTGAATTGTTGAACTCGGATGTAATCGACGTAGAACTCGGTAGTGGTCCAGAGAATGATGATGAGGATGGTGATGGTGATGGTTATGATGGTGAGAGTCAGGATGGAGATGAAGAGCCAGTGAACCTTAAGAATTGGCAGATGAAGAAATTGGCCAGAGCTTTGAAAGCCGGCCGCCGCAAAACAAGTATAAAAAATCTTGCTGCCGATCTTTGTCTTGATAGGGCTCTTGTTCTTCAGTTACTTCGTGAACCTCCTCCAAATCTCTTAATGATGAGTCTTACTATACCTGATGAACCTGCAAAAACAGTAGTATCACTTGAAACTAAGCCCAGTGAGATTCTCCTTCAAGAAACAAGTATTGATCAAGTTGAATCTGAACCCGAGGCTAAAGTACCTGTTCATACCTTGCAACGTAATTGGTATGCTCAAAAGCGATTGAAGAAGGTCCATGTTGACACTCTGGAGAGAGTTTATAGGAAATCAAAACGACCTACTAATGCAATGATCAGCAGCATTGTACATGTAACAAACATTCCTCGAAAAAGAGTTGTTAAGTGGTTTGAAGACAAACGTGCTGAAGAGGGAGTTCCAGATCATCGTCTTCCTTACCAGCGCCATGTTCCTGAAACGGCTTGA 1014 0.4438 MSAAFQCLSCARTEPFLLTPAQSLTLPFQRKPFFCSLPLSSRARNLSSSIVAASSKKKKNKKKLSRHHVTEGGEEDMDAFELLFNQLEQDLKRGDLSDDDGEDGITEEEMSLLERELENALGDFDAELLNSDVIDVELGSGPENDDEDGDGDGYDGESQDGDEEPVNLKNWQMKKLARALKAGRRKTSIKNLAADLCLDRALVLQLLREPPPNLLMMSLTIPDEPAKTVVSLETKPSEILLQETSIDQVESEPEAKVPVHTLQRNWYAQKRLKKVHVDTLERVYRKSKRPTNAMISSIVHVTNIPRKRVVKWFEDKRAEEGVPDHRLPYQRHVPETA* 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1192 337 ProSiteProfiles 'Homeobox' domain profile. 263 323 IPR001356 GO:0003677
Vra5g1192 337 PANTHER HOMEOBOX PROTEIN 8 23 332 - -
Vra5g1192 337 Pfam Homeodomain 272 319 IPR001356 GO:0003677
Vra5g1192 337 MobiDBLite consensus disorder prediction 136 167 - -
Vra5g1192 337 Gene3D - 263 321 - -
Vra5g1192 337 SMART HOX_1 269 327 IPR001356 GO:0003677
Vra5g1192 337 MobiDBLite consensus disorder prediction 139 161 - -
Vra5g1192 337 CDD homeodomain 269 318 IPR001356 GO:0003677
Vra5g1192 337 SUPERFAMILY Homeodomain-like 265 325 IPR009057 -
Vra5g1192 337 PANTHER ZINC-FINGERS AND HOMEOBOXES RELATED 23 332 - -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Vra5g1192 Homeodomain 7.6e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1192 - - gmx:100798718 479.174
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g1192 5 18316245 18320726 Vra5g1192 5 18316245 18320726 ECH