Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1176 ATGGAAGCACCATTTAAGGGAATAAATGAAGATGTCAAGGGAAGATTTCAGTGCTATAAACAAGATTGGATTTGTGATATCTGTTCTGGTCCTAGCACATGGGCTCCAACTTTCTACATATTCTTTGCCTCTGCCCTCCCTGTTATTGTTTTTGGACAGCAACTTCATAGGGATACTGATGGAAGTATGGGCATAGTGGAAACAATGGCATCTACTGCTATTTGTGGAATTATCCACTCAATATTTGGTGGCCAACCTTTGTTGATTTTAGGTGTTGCTGAACCCACTGTCATAATGTACACTTACTTGTACAGTATTTGCGAAAGAAGCCCTGCACTGGGTAGAGAGCTCTTTCTGGCAGCGCTTAGTTGGGTTTGTGTTTGGACGGGATTCTTCCTGGTGGTGCTTGCAATTTTTAATGCTTGCTCAATTATCTCAAGGTTTACAAGAATTGCTGGGGAGTTATTTGCCATGCTCATAACTGTTCTTTTCTTTCAAGAGGCTGTAAAGGGGTTGATAGGAGAGTTCAACGTGGTCAATAAAGGAAATCCTTCTGCAGAAGAATTTCAATTCCACTGGCTGTATACAAATGGATTACTTGCAATCATTTTCGGTATTGGATTACTTTTCACTGCCCTAATAAGCAGAAGAGCAAGAGCGTGGAAATATGGAACAGGGTGGCTACGAGGATTTATAGCAGATTATGGGATTCCACTGATGGTAGTGTTATGGACTGCACTATCTTATGCTGTACCAAGAAAAGTTCCAGATGGCATTCCTAGAAGGCTTTTTTCTCCTCTACCGTGGGAACCTAAATCACTCTATCACTGGACAGTAGTGAAGGATATGTGGAAGGTACCCCCAGCTTATGTATTGGGGGCAAGTATTCCAGCTCTGATGATAGCAGGGTTATACTTTTTTGATCACAGTGTAGCTTCGCAGATGGCACAACAGAAAAAATTTAACCTTCAAAAACCATCAGCCTACCACTATGATGTTTTCTTGCTTGGAATAATGACTCTGATTTGTGGGCTCCTTGGTCTTCCTCCTTCAAATGGAGTCCTTCCACAGTCCCCCATGCATACAAAAAGTTTAGCAGTTCTTAGGAAGAAGGTTAAAGAATTGGAGAGTTCAAAGGAATCTAGGAACAATGGTGGTGCGGAAGAAAGTTTGGATGAGAAACAGAGATATGAATATCTACCAGTCGAGGTTCATGAGCAAAGAGTGACGAACCTTTTGCAGTCTGTCCTGGTCGGTCTCTCAATCCTAGCCATGCCTGTAATCAGAGAGATACCAACCTCAGTTCTATGGGGATATTTTGCTTACATGGCAATTGATAGTCTCCCAGGAAATCAGTTCTGGGAAAGGATATTGCTCCTCTTCATCACCCCAGGCCGCCGTCACAAAATTTTCGAAGATTTTCATCCCTCTTTTCTGGAGAAAGTACCATTCAAGACCATAGTTACATTTACACTCTTACAGTTAGGATATTTTTTAATATGTTACGGGGTAACTTGGATTCCTTTTGTTGGAATACTCTTCCCTGTACCATTTTTCCTTCTCATATTCATAAGAGAGCGCTTGCTTCCAAAGATATTCAAGCCTAACCATCTCGAAGAACTAGATGCTTCTGGGTATGAGGAAATTGTTGGAGTTCCACCTGCTTTAAAAATGGATATGGAGTCAGATACTGATGATGTAGGAAGCGAAGAGGACTTCTCCGATGCAGAGATATTAGATGAGATGACAACCAACAGGGGAGAGTTGAAAGTGATAACTACCAGCAGAAATCATAGCTTCAATGACGACAGACAAGTTCACGTTTGTCCTAGAGATGCTGTCTGA 1845 0.4168 MEAPFKGINEDVKGRFQCYKQDWICDICSGPSTWAPTFYIFFASALPVIVFGQQLHRDTDGSMGIVETMASTAICGIIHSIFGGQPLLILGVAEPTVIMYTYLYSICERSPALGRELFLAALSWVCVWTGFFLVVLAIFNACSIISRFTRIAGELFAMLITVLFFQEAVKGLIGEFNVVNKGNPSAEEFQFHWLYTNGLLAIIFGIGLLFTALISRRARAWKYGTGWLRGFIADYGIPLMVVLWTALSYAVPRKVPDGIPRRLFSPLPWEPKSLYHWTVVKDMWKVPPAYVLGASIPALMIAGLYFFDHSVASQMAQQKKFNLQKPSAYHYDVFLLGIMTLICGLLGLPPSNGVLPQSPMHTKSLAVLRKKVKELESSKESRNNGGAEESLDEKQRYEYLPVEVHEQRVTNLLQSVLVGLSILAMPVIREIPTSVLWGYFAYMAIDSLPGNQFWERILLLFITPGRRHKIFEDFHPSFLEKVPFKTIVTFTLLQLGYFLICYGVTWIPFVGILFPVPFFLLIFIRERLLPKIFKPNHLEELDASGYEEIVGVPPALKMDMESDTDDVGSEEDFSDAEILDEMTTNRGELKVITTSRNHSFNDDRQVHVCPRDAV* 615
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1176 614 PANTHER BORON TRANSPORTER-LIKE PROTEIN 1 373 - -
Vra5g1176 614 PANTHER BORON TRANSPORTER-LIKE PROTEIN 373 608 - -
Vra5g1176 614 PANTHER ANION EXCHANGE PROTEIN 1 373 IPR003020 GO:0005452|GO:0006820|GO:0016020
Vra5g1176 614 PANTHER ANION EXCHANGE PROTEIN 373 608 IPR003020 GO:0005452|GO:0006820|GO:0016020
Vra5g1176 614 Pfam HCO3- transporter family 197 492 IPR011531 GO:0006820|GO:0016021
Vra5g1176 614 Pfam HCO3- transporter family 4 177 IPR011531 GO:0006820|GO:0016021
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1176 Vra-Chr5 18197372 18203017 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g1176 4 613 Antiporters AT4G32510 60.597 0.0 789
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1176 K24194 - gmx:100787412 910.212
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g1176 5 18197372 18203017 Vra5g1176 5 18197372 18203017 ECH
Vra5g1176 5 18197372 18203017 Vra6g1550 6 30654428 30659410 ECH
Vra6g1550 6 30654428 30659410 Vra5g1176 5 18197372 18203017 PCT