Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1171 ATGGAAAGTGATGAACTGAGAGCTGCAAGTGCACGCATAGGGAGCTCCAGCGTGTGGAGAAGCAGTGGTGTTGATGTGTTTTCAGGGTCTTCAAGAAGAGAAGAGGATGAACAAGAGCTTAAATGGGCTGCTATTGAGAAACTCCCCACGTATCTACGCATGACTAGGGGCATTCTCACAGAGGCTGAAGGCCAACCTCCTACGGAGATTCATATAAACAAACTTGGTCCTCTTCAGAGGAAGAACTTGGTGGAGAGGCTTGTCAAGATTGCAGAACAAGATAATGAGAAGTTCTTGTTCAAGTTAAGAGACCGCATTGATCGTGTTGGACTTGAAATTCCCACTATTGAAGTCCGTTTTGAACACTTGAATGTTGAGGCAGAAGCTCATGTGGGAAGCAGAGCACTACCTACAATCTTTAACTTCTGCATTGATTTGTTGGAGGGGTTCCTCAATTCTCTTTACCTTATTCCCAGTCGAAAGAAGCCATTCACAGTTCTTGATGATGTCAGCGGAATCATCAAGCCTAAAAGAATGACACTTCTTTTAGGCCCTCCAAGCTCTGGAAAGACCACATTATTGTTGGCACTGGCTGGAAGACTTGGCAAAGATCTAAAATCTTCGGGGCGAGTTTTGTATAATGGTCGTGGGATGGAGGAATTTGTGCCTCAAAGAACATCAGCTTACATAAGTCAAACTGATCTACACATAGGAGAAATGACAGTGAGAGAAACATTGGCCTTTTCAGCAAGGTGTCAAGGGATTGGAACGCGTTATGAGATGCTGGCAGAACTGTCAAGAAGAGAGAAGGCTGAAAACATTAAGCCAGATCCTGATCTTGATATTTACATGAAGGCAGCAGCACTTGAAGGCCAAGAAACCAATGTGGTTACTGATTATATAATGAAGATTTTGGGACTAGAAGTTTGTGCGGATACCATGGTAGGGGATGACATGATTCGGGGTATTTCTGGCGGACAGAAGAAAAGAGTCACAACTGGTGAGATGCTAGTTGGACCAGCAAGAGCACTTTTCATGGATGAAATTTCAACTGGTTTAGACAGTTCCACCACATTCCAAATGGTTAATTCTCTAAGACAATCTATCCACATTCTGAATGGAACAGCTGTGATCTCTCTTCTCCAGCCTGCACCAGAAACTTACGAGTTATTTGATGATATTATTCTCCTCTCAGATGGTCAAATTGTGTATCAGGGTCCAAGGGAAAATGTGCTTGAGTTCTTTGAATACATGGGGTTCAAATGTCCAGAGAGGAAAGGAGTAGCAGATTTTTTACAAGAAGTAACATCAAGAAAAGACCAAGAACAATACTGGGCAAATAAAGATGAGCCATACATCTTCGTCACTGTTAGAGAGTTTGCTGAGGCATTTCAGTCATTTCACATTGGTCGAAAGCTTGGTGACGAACTTGCCACCCCATTTGACATGTCCAAAGGCCACCCTGCTGTGTTAACAAAGAACAAGTACGGTGTTAGCAAGAAGGAGCTCTTGAAGGCTTGCGTGTCCAGAGAATTCTTACTTATGAAAAGGAATTCGTTTGTCTATATTTTCAAGATGTGGCAATTGATTTTAACGGGTTTCATAACAATGACACTGTTCCTGAGAACTGAGATGCACCGGGATACTGAAACTGATGGTGGTATCTTTATGGGTGCATTGTTCTTCGTACTGATTGTGATTATGTTCAACGGATACTCCGAGCTATCTATGTCCATCATGAAACTCCCCGTTTTCTATAAGCAAAGGGACCTTCTCTTTTTTCCTTCTTGGGCATATTCTCTGCCTACATGGATCCTTAAGATTCCTATAACCTTAGTGGAAGTTGGTATTTGGGTTGTGATGACTTACTATGTAATAGGATTTGATCCTAGTATTGAAAGGTTCATCAAGCAGTACTTTCTGCTTGTTTGTATCAACCAGATGGCATCTGGGCTTTTTCGATTTATGGGAGCAGTTGGGAGGAACATCATCGTGGCAAACACAGTTGGGTCATTTGCTTTACTTGCAGTTATGGTCATGGGTGGATTTATCCTATCTAGAGTTGATGTGAAGAGGTGGTGGCTGTGGGGTTACTGGTTCTCGCCCATGATGTATGCACAGAACGCTCTAGCTGTTAATGAATTTCTCGGAAAGAGTTGGTTACATGTCGCACCAAATTCAACAGAACCATTAGGAGTGAAGGTGTTGAAGTCAAGAGGGATATTCCCTGAAGCATACTGGTATTGGATTGGTGTTGGAGCTTCCATTGGATACATGTTACTGTTCAACTTCCTTTTCCCCTTGGCATTACAATATCTTGACCCATTTGGTAAACCCCAAGCTTTAATATCAGAAGAAGCCTTAGCTGAGAGAAATGCAGGCAGAAAGGAACACATCATTGAATTATCGTCTAGATTCAAAGGTTCTTCTGATAAAGGGAATGAAAATCGCAGAAGTGTGTGCTCCGGAACTCTGTCAGCAAGAGTGGGCAGCATTGGTGCAAGCGAGCATAACACAAAGCGAGGGATGGTTCTTCCTTTCACACCCCTTTCTATTACTTTTGATGAAATCAGATATGCGGTGGAGATGCCACAGGAAATGAAGAACCAAGGCATTCTTGAAGATCGACTTGAACTGTTGAAGGGTGTCAATGGAGCTTTTAGACCAGGAGTTCTGACAGCTCTGATGGGTGTAAGTGGGGCTGGTAAAACAACTTTAATGGACGTGTTATCTGGAAGGAAATCAACAGGTTATATTCAAGGGCAAATCACTATATCCGGTTACCCTAAGAAGCAAGAAACTTTTGCCCGCATTGCAGGATACTGTGAACAGACCGATATCCACTCTCCCCATGTTACGGTGTATGAGTCTTTGGTTTATTCTGCATGGCTTCGGTTACCACTTGAGGTTGATTCTGCAACTAGACAGATGTTCATTGAGGAAGTTATGGAGCTGGTAGAGCTGACTTCACTGAGAGAAGCCTTGGTGGGATTACCAGGAGTGAATGGCCTATCCACGGAGCAGCGAAAGAGGTTAACAATTGCAGTTGAACTTGTTGCCAATCCATCTATTATATTCATGGATGAACCTACCTCTGGCCTTGATGCCAGAGCTGCTGCAATAGTTATGAGGACAGTGAGGAATACAGTGGATACCGGGCGAACCGTGGTCTGCACAATCCACCAGCCTAGCATCGATATATTTGATGCTTTTGATGAGCTACTTCTGTTGAAGCGTGGAGGTGAGGAAATATATGTGGGGCCTCTAGGCCAACATTGTTCTCAACTGATCAGCTACTTTGAGGGAATTAATGGGGTGCCAAAGATTAAGACTGGTTATAATCCTGCCACTTGGATGTTGGAGGTTACTTCAGAAGCACAAGAAGCAGCTCTTGGAGTTAACTTCACTGAAATATACAAGAATTCTGACCTATATAGGAGAAACAAGGCCTTGATAAGGGAACTTAGCACACCTCCAGCAGGTTCCAAAGATTTGTACTTCCCCACAAAGTACTCACAGACTTTCTTCACTCAATGCATGGCTTGCCTTTGGAAACAACACCTATCATACTGGAGAAATCCCCCATACAGTGCAGTGAGACTTTTATTCACAACAATCATAGCCTTACTGTTTGGGACAATATTTTGGGATATCGGCTCTAAAAGGCAAAGAAGACAAGATATATTTAATGCAATGGGGTCCATGTATGCTGCAGTGCTCTTCATCGGGATACAAAATTCTACATCTGTGCAACCTGTAGTAGCCATAGAGAGAACAGTCTTCTACAGAGAAAGAGCTGCTGGAATGTACTCAGCTTTACCATATGCATTTGGACAGGTTGCCATTGAGATCCCATACATACTCATACAGACCCTCGTGTATGGGGTGATAGTGTATGCTATGATTGGGTTTGATTGGACACTCAGCAAGTTCTTTTGGTATCTCTTCTTCATGTTCTTCACCTTTTTATACTTCACCCTCTATGGCATGATGGCTGTGGGTCTTACCCCAGATCACAACGTTGCTGCTATAGTTTCCTTTGGGTTCTACATGATATGGAACCTCTTCTCAGGATTTGTGATTCCAAGAACAAGGATGCCAGTGTGGTGGAGATGGTACTTTTGGATCTGTCCAGTGTCTTGGACCTTGTATGGATTGGTTACTTCACAATTCGGTGACATAAAAGAGCGTATAGAGAATGGAGAGAGTGTGGAAGAGTTTGTTAGGAGTTACTTTGGGTATAGAGATGACTTTGTAGGTGTAGCTGCTGCTGTGCTTGTTGGGTTTTCACTACTTTTTGGATTTACCTTTGCCTTCTCAATCAAGGCATTCAATTTCCAAAAGAGATGA 4350 0.4294 MESDELRAASARIGSSSVWRSSGVDVFSGSSRREEDEQELKWAAIEKLPTYLRMTRGILTEAEGQPPTEIHINKLGPLQRKNLVERLVKIAEQDNEKFLFKLRDRIDRVGLEIPTIEVRFEHLNVEAEAHVGSRALPTIFNFCIDLLEGFLNSLYLIPSRKKPFTVLDDVSGIIKPKRMTLLLGPPSSGKTTLLLALAGRLGKDLKSSGRVLYNGRGMEEFVPQRTSAYISQTDLHIGEMTVRETLAFSARCQGIGTRYEMLAELSRREKAENIKPDPDLDIYMKAAALEGQETNVVTDYIMKILGLEVCADTMVGDDMIRGISGGQKKRVTTGEMLVGPARALFMDEISTGLDSSTTFQMVNSLRQSIHILNGTAVISLLQPAPETYELFDDIILLSDGQIVYQGPRENVLEFFEYMGFKCPERKGVADFLQEVTSRKDQEQYWANKDEPYIFVTVREFAEAFQSFHIGRKLGDELATPFDMSKGHPAVLTKNKYGVSKKELLKACVSREFLLMKRNSFVYIFKMWQLILTGFITMTLFLRTEMHRDTETDGGIFMGALFFVLIVIMFNGYSELSMSIMKLPVFYKQRDLLFFPSWAYSLPTWILKIPITLVEVGIWVVMTYYVIGFDPSIERFIKQYFLLVCINQMASGLFRFMGAVGRNIIVANTVGSFALLAVMVMGGFILSRVDVKRWWLWGYWFSPMMYAQNALAVNEFLGKSWLHVAPNSTEPLGVKVLKSRGIFPEAYWYWIGVGASIGYMLLFNFLFPLALQYLDPFGKPQALISEEALAERNAGRKEHIIELSSRFKGSSDKGNENRRSVCSGTLSARVGSIGASEHNTKRGMVLPFTPLSITFDEIRYAVEMPQEMKNQGILEDRLELLKGVNGAFRPGVLTALMGVSGAGKTTLMDVLSGRKSTGYIQGQITISGYPKKQETFARIAGYCEQTDIHSPHVTVYESLVYSAWLRLPLEVDSATRQMFIEEVMELVELTSLREALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDELLLLKRGGEEIYVGPLGQHCSQLISYFEGINGVPKIKTGYNPATWMLEVTSEAQEAALGVNFTEIYKNSDLYRRNKALIRELSTPPAGSKDLYFPTKYSQTFFTQCMACLWKQHLSYWRNPPYSAVRLLFTTIIALLFGTIFWDIGSKRQRRQDIFNAMGSMYAAVLFIGIQNSTSVQPVVAIERTVFYRERAAGMYSALPYAFGQVAIEIPYILIQTLVYGVIVYAMIGFDWTLSKFFWYLFFMFFTFLYFTLYGMMAVGLTPDHNVAAIVSFGFYMIWNLFSGFVIPRTRMPVWWRWYFWICPVSWTLYGLVTSQFGDIKERIENGESVEEFVRSYFGYRDDFVGVAAAVLVGFSLLFGFTFAFSIKAFNFQKR* 1450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1171 1449 MobiDBLite consensus disorder prediction 1 30 - -
Vra5g1171 1449 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 873 1091 IPR027417 -
Vra5g1171 1449 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 151 424 IPR003439 GO:0005524
Vra5g1171 1449 PANTHER CASSETTE TRANSPORTER, PUTATIVE-RELATED 10 1449 - -
Vra5g1171 1449 SMART AAA_5 176 408 IPR003593 -
Vra5g1171 1449 SMART AAA_5 889 1081 IPR003593 -
Vra5g1171 1449 Gene3D - 155 462 IPR027417 -
Vra5g1171 1449 CDD ABCG_PDR_domain2 849 1087 IPR034003 -
Vra5g1171 1449 Pfam ABC-transporter N-terminal 91 142 IPR029481 -
Vra5g1171 1449 Pfam ABC-2 type transporter 382 434 IPR043926 GO:0140359
Vra5g1171 1449 Pfam ABC-2 type transporter 1177 1391 IPR013525 GO:0016020|GO:0140359
Vra5g1171 1449 Pfam ABC-2 type transporter 503 715 IPR013525 GO:0016020|GO:0140359
Vra5g1171 1449 Pfam ABC transporter 167 349 IPR003439 GO:0005524
Vra5g1171 1449 Pfam ABC transporter 880 1032 IPR003439 GO:0005524
Vra5g1171 1449 PANTHER ATP-BINDING CASSETTE TRANSPORTER 10 1449 - -
Vra5g1171 1449 Pfam Plant PDR ABC transporter associated 720 783 IPR013581 -
Vra5g1171 1449 Gene3D - 867 1099 IPR027417 -
Vra5g1171 1449 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 852 1104 IPR003439 GO:0005524
Vra5g1171 1449 MobiDBLite consensus disorder prediction 14 28 - -
Vra5g1171 1449 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 162 424 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1171 Vra-Chr5 18144808 18152041 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1171 K08711 - gmx:100804030 2723.35
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g1543 6 30548167 30556469 Vra5g1171 5 18144808 18152041 PCT
Vra5g1171 5 18144808 18152041 Vra6g1542 6 30534655 30545113 PCT