Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1170 ATGGAAGAAATTGAAGGGGTGGATTGTTGCAGTAAAAGTGAAAGCAGGAGCTCTAGTGGGACTCGACCTCCCAATCCCAACCCTCCTTCACATCGCCAATGCAAACTTGTTCGCCACGCTTCTCTCATAAAAACAAATTTGTCTGATGTATCTGAGCCAGGGGATGTTACCGAAGATTACCAATCTGATTTCTTTCCAACGCTTCGTTCTGGAGCTTGCGCTGATATTGGATTTCGGTCAAGTATGGAAGATGTATATGTTTGTGTTGACAATTTTATGCACGATTATGGACTCAAGAATTGTACAGAAGGACCCAGTGCTTTCTATGGGGTGTTTGATGGACATGGGGGAAAGCATGCTGCTGACTTTGCTTGCCAGCATTTGCCAAAGTTTATTCTCGATGACGAAGATTTCCCTGGAGACATTGAAAGGATAGTTGCTTCGGCATTTCTGCAAACAGACAATGCCTTTGCAGAAGCTTGCTCTCTGGATGGTGCACTTGCATCAGGCACCACTGCATTAGCTACTCTTGTTATAGGAAGTGATTGCAGGTTGTTGGTGGTGGCAAATGCTGGAGATTGTCGAGCTGTGCTGTGCCGTCGTGGGAAAGCAATTGAAATGTCAAGAGATCATAAACCGAGTTGCAACAAAGAAAGGAAGCGAATAGAGGCTTCTGGGGGGTATGTGTACGATGGATATCTTAACGGGCAACTGAATGTTGCTCGAGCACTTGGTGACTGGCACATGGAAGGAATGAAGAGCAAAGATGGTGGACCACTGACTTCAGAACCGGAACTTATGAGTACAAAACTGACGAGCGAGGACGAATTTCTGATCATAGGATGTGATGGGATTTGGGATGTATTCAGGAGCCAAAATGCAGTGGATTTCGCCCGGCGCAGGCTCCAGGAGCATAATGACCCAACCTTGTGCAGTAAAGATCTGGTTGATGAGGCTTTAAAGAGAAAGAGTGGAGACAATTTGTCTGCAGTTGTGATTTGCTTCCAGCAGCAACCTCCTCCGAACTTGGTGGCCCCTCGCTCTAGAGTGCACCGGAGCTTCTCTGCTGAAGGTTTGAAGGAGTTGCAGAGTTTCCTCGATAGCTTGGGTAATTGA 1116 0.4659 MEEIEGVDCCSKSESRSSSGTRPPNPNPPSHRQCKLVRHASLIKTNLSDVSEPGDVTEDYQSDFFPTLRSGACADIGFRSSMEDVYVCVDNFMHDYGLKNCTEGPSAFYGVFDGHGGKHAADFACQHLPKFILDDEDFPGDIERIVASAFLQTDNAFAEACSLDGALASGTTALATLVIGSDCRLLVVANAGDCRAVLCRRGKAIEMSRDHKPSCNKERKRIEASGGYVYDGYLNGQLNVARALGDWHMEGMKSKDGGPLTSEPELMSTKLTSEDEFLIIGCDGIWDVFRSQNAVDFARRRLQEHNDPTLCSKDLVDEALKRKSGDNLSAVVICFQQQPPPNLVAPRSRVHRSFSAEGLKELQSFLDSLGN* 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1170 371 CDD PP2Cc 69 335 IPR001932 -
Vra5g1170 371 PANTHER PROTEIN PHOSPHATASE 2C 46 357 IPR015655 GO:0004722|GO:0006470
Vra5g1170 371 PANTHER PROTEIN PHOSPHATASE 2C 27-RELATED 46 357 - -
Vra5g1170 371 ProSitePatterns PPM-type phosphatase domain signature. 108 116 IPR000222 GO:0043169
Vra5g1170 371 Gene3D - 50 339 IPR036457 -
Vra5g1170 371 SUPERFAMILY PP2C-like 63 337 IPR036457 -
Vra5g1170 371 MobiDBLite consensus disorder prediction 1 33 - -
Vra5g1170 371 Pfam Protein phosphatase 2C 71 327 IPR001932 -
Vra5g1170 371 ProSiteProfiles PPM-type phosphatase domain profile. 69 335 IPR001932 -
Vra5g1170 371 SMART PP2C_4 59 333 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1170 Vra-Chr5 18140644 18143531 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g1170 1 371 PP2C-type Phosphatase Gene Family AT2G25620 66.583 0.0 524
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1170 K14803 - gmx:100815725 667.922