Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1167 ATGTCTCAGACTAACTGGGAAGCTGACAAGATGTTAGATGTTTATATCCATGATTATCTTGTCAAGAGAGATTTGAAGGCTTCTGCTCAGGCTTTTCAAGCTGAAGGGAAAGTATCCTCGGACCCTGTTGCTATTGATGCCCCGGGAGGTTTTCTGTTTGAGTGGTGGTCGGTTTTCTGGGATATCTTTATTGCTAGGACCAACGAGAAGCACTCAGAGGTTGCTGCATCTTATATTGAGACACAATTAATAAAGGCAAGGGAGCAACAACAGCAGCAACAACAGCAACCACAATCCCAGCAGTCACAGCATCAGCAACAGCAACAACAACACATGCAGATGCAACATCTCCTCTTGCAGAGAGCACAACAACAGCAACAGCAGCAGCAACAACAACAACAGCAATCACAACAGCAACAGCCTCAACCACAACAACAACAAAGCAGGGATAGGGCTCACCTTTTAAATGGTAGTTCAAATGGATTAGTCGGAAACCCTGGAACTGCAAATGCACTAGCAACAAAGATGTATGAGGAAAGATTAAAACTTCCCCTTCAAAGGGACTCTTTAGATGATGCAGCACTGAAGCAAAGATTTGGTGAGAACATGGGCCAACTTTTGGATCCAAGTCATGCATCGATATTGAAGTCAGCTGCAGCCCCTGGCCAACCTTCTGGGCAAGTTTTACATGGTGCTGCTGGGGGGATGTCTCCACAAGTTCAAGCACGTACTCAGCAATTACCAGGGTCTACTCTGGATATAAAAGGCGAGATTAGTCCTGTTTTAACTCCCAGAGCTGCTGGTCCTGAAGGATCATTGATGGGAATGCCTGGATCAAATCAAGGTAGCAATAATTTGACTTTGAGAGGGTGGCCACTCACTGGTTTGGAGCAACTGCGCTCTGGTCTACTCCAGCAACAAAAATCTTTCATGCAGGCTCCGCAGCCTTTTCATCAAATACAAATGTTGACACCACAGCATCAGCAACAGCTTATGCTAGCACAACAAAATTTGGCGTCACCATCTGCCACTGAAGAAAGTAGAAGACTAAGAATGCTTTTGAATAATAGGGGTATTGGTCTAAACAAGGACGGTCTTTCAAATCCTGTTGGTGATGTGGTATCTAATGTCGGATCTCCTCTTCAAGGTGGTGGCCCTCCTTTTCCTCGTGGAGATACAGATATGCTAATGAAGGTGAAACTGGCTCAGCTACAGCAGCAACATCAACAACAATCAAGTACCAACGCACAGCAGCAGCAGCAGCTTCAACAACATGCTCTTTCAAACCAGCAATCCCAGACTTCTAATCATAGCATGCATCAGCAAGATAAAGTAGGGGGAGGTGGTGGCAGTGTCACTGTGGATGGTGGCATGTCAAACTCATTTAGAGGAAATGACCAGGTTTCAAAAAATCAAATTGGGAGAAAGAGAAAGCAGCCTGGATCATCATCGGGTCCTGCCAACAGTACAGGCACAGCAAATACGACAGGTCCATCGCCAAGTTCAGCACCCTCAACTCCCTCAACACATACGCCTGGAGATGTGATATCGATGCCTGCCTTGCCCAATAGTGGTAGTTCTTCAAAGCCTCTAATGATGTTTGGCACTGATGGTACCGGAGCCCTTACATCATCCTCTAACCAGTTGGCTGATGTGGATCGCTTTGTGGAGGATGGATCACTAGATGAAAATGTTGAGTCTTTTTTGTCCCAGGATGATACAGACCCTAGAGATACTGTTGGCCGTTGTATGGATGTAAGCAAAGGCTTCACATTTACTGATGTAAGTTCTGTACGGGCAAGCACAAGTAAAGTTGCCTGTTGCCATTTCTCATCTGACGGTAAATTACTTGCAAGTGGTGGGCATGACAAAAAGGCTGTTTTATGGTACACGGATTCTCTTAAACAAAAAGCTACTCTTGAAGAACATTCATCTTTGATTACTGATGTTCGGTTCAGTCCAAGCATGCCTCGTCTTGCAACTTCTTCATTTGACAGAACTGTCAGGGTTTGGGATGTTGACAATCCTGGTTATTCTCTGCGCACCTTCACGGGACATTCTTCAACTGTTATGTCACTAGATTTTCATCCAAATAAGGATGACCTCATCTGCTCATGTGACGGCGATGGTGAGATACGATACTGGAGCATAAACAACGGCAATTGTGCTAGAGTCTGGAAGGGTGGCACCACCCAGATGAGATTTCAGCCTCGTCTAGGGAGGTACCTTGCTGCAGCAGCAGAGAATATTGTGTCTATATTTGATGTGGAGACACAAGTGTGTCGATATTCATTAAAGGGACACACAAAAACGGTGGACTGTGTGTGTTGGGACCCTTCTGGGGAGTTGCTAGCATCTGTGAGTGAGGACTCTGTGAAGGTGTGGTCTCTTGGATCCGGGAGTGAAGGGGAATGTGTTCATGAACTTAGCTGTAATGGCAGCAAGTTTCATGCATGTGTTTTCCACCCAACATACCCTTCACTGCTGGCCATTGGCTGTTACCAGTCATTGGAGCTGTGGAACATGAGCGAGAACAAGACAATGACTCTGTCTGCTCATGATGGTCTTATTACTGCCTTGGCTGTTTCAACTGTAAATGGTTTGATTGCTTCTACCAGTCATGACAAGTTCCTCAAGCTCTGGAAGTGA 2649 0.456 MSQTNWEADKMLDVYIHDYLVKRDLKASAQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFWDIFIARTNEKHSEVAASYIETQLIKAREQQQQQQQQPQSQQSQHQQQQQQHMQMQHLLLQRAQQQQQQQQQQQQQSQQQQPQPQQQQSRDRAHLLNGSSNGLVGNPGTANALATKMYEERLKLPLQRDSLDDAALKQRFGENMGQLLDPSHASILKSAAAPGQPSGQVLHGAAGGMSPQVQARTQQLPGSTLDIKGEISPVLTPRAAGPEGSLMGMPGSNQGSNNLTLRGWPLTGLEQLRSGLLQQQKSFMQAPQPFHQIQMLTPQHQQQLMLAQQNLASPSATEESRRLRMLLNNRGIGLNKDGLSNPVGDVVSNVGSPLQGGGPPFPRGDTDMLMKVKLAQLQQQHQQQSSTNAQQQQQLQQHALSNQQSQTSNHSMHQQDKVGGGGGSVTVDGGMSNSFRGNDQVSKNQIGRKRKQPGSSSGPANSTGTANTTGPSPSSAPSTPSTHTPGDVISMPALPNSGSSSKPLMMFGTDGTGALTSSSNQLADVDRFVEDGSLDENVESFLSQDDTDPRDTVGRCMDVSKGFTFTDVSSVRASTSKVACCHFSSDGKLLASGGHDKKAVLWYTDSLKQKATLEEHSSLITDVRFSPSMPRLATSSFDRTVRVWDVDNPGYSLRTFTGHSSTVMSLDFHPNKDDLICSCDGDGEIRYWSINNGNCARVWKGGTTQMRFQPRLGRYLAAAAENIVSIFDVETQVCRYSLKGHTKTVDCVCWDPSGELLASVSEDSVKVWSLGSGSEGECVHELSCNGSKFHACVFHPTYPSLLAIGCYQSLELWNMSENKTMTLSAHDGLITALAVSTVNGLIASTSHDKFLKLWK* 883
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1167 882 ProSiteProfiles Trp-Asp (WD) repeats profile. 640 675 IPR001680 GO:0005515
Vra5g1167 882 Coils Coil 114 139 - -
Vra5g1167 882 ProSiteProfiles Trp-Asp (WD) repeats profile. 598 639 IPR001680 GO:0005515
Vra5g1167 882 ProSiteProfiles Trp-Asp (WD) repeats profile. 850 882 IPR001680 GO:0005515
Vra5g1167 882 SMART WD40_4 591 630 IPR001680 GO:0005515
Vra5g1167 882 SMART WD40_4 719 755 IPR001680 GO:0005515
Vra5g1167 882 SMART WD40_4 633 672 IPR001680 GO:0005515
Vra5g1167 882 SMART WD40_4 802 841 IPR001680 GO:0005515
Vra5g1167 882 SMART WD40_4 758 796 IPR001680 GO:0005515
Vra5g1167 882 SMART WD40_4 843 882 IPR001680 GO:0005515
Vra5g1167 882 SMART WD40_4 676 716 IPR001680 GO:0005515
Vra5g1167 882 ProSitePatterns Trp-Asp (WD) repeats signature. 659 673 IPR019775 -
Vra5g1167 882 Pfam LisH 10 36 IPR006594 GO:0005515
Vra5g1167 882 ProSiteProfiles Trp-Asp (WD) repeats profile. 683 725 IPR001680 GO:0005515
Vra5g1167 882 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 683 721 - -
Vra5g1167 882 SUPERFAMILY WD40 repeat-like 596 882 IPR036322 GO:0005515
Vra5g1167 882 Coils Coil 401 421 - -
Vra5g1167 882 Gene3D - 732 882 IPR015943 GO:0005515
Vra5g1167 882 Gene3D - 575 731 IPR015943 GO:0005515
Vra5g1167 882 MobiDBLite consensus disorder prediction 402 442 - -
Vra5g1167 882 PANTHER TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8 1 882 IPR044716 GO:0003714
Vra5g1167 882 MobiDBLite consensus disorder prediction 89 167 - -
Vra5g1167 882 ProSiteProfiles Trp-Asp (WD) repeats profile. 765 805 IPR001680 GO:0005515
Vra5g1167 882 SMART Lish 8 40 IPR006594 GO:0005515
Vra5g1167 882 MobiDBLite consensus disorder prediction 402 532 - -
Vra5g1167 882 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 850 882 - -
Vra5g1167 882 CDD WD40 598 882 - -
Vra5g1167 882 ProSiteProfiles LIS1 homology (LisH) motif profile. 8 40 IPR006594 GO:0005515
Vra5g1167 882 Pfam WD domain, G-beta repeat 679 716 IPR001680 GO:0005515
Vra5g1167 882 Pfam WD domain, G-beta repeat 637 672 IPR001680 GO:0005515
Vra5g1167 882 Pfam WD domain, G-beta repeat 761 796 IPR001680 GO:0005515
Vra5g1167 882 Pfam WD domain, G-beta repeat 599 629 IPR001680 GO:0005515
Vra5g1167 882 Pfam WD domain, G-beta repeat 845 882 IPR001680 GO:0005515
Vra5g1167 882 PANTHER TRANSCRIPTIONAL COREPRESSOR LEUNIG-LIKE PROTEIN 1 882 - -
Vra5g1167 882 MobiDBLite consensus disorder prediction 454 513 - -
Vra5g1167 882 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 640 675 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1167 Vra-Chr5 18093354 18102247 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g1167 677 881 Miscellaneous Gene Families AT5G08390 24.286 1.52e-12 69.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Vra5g1167 WD40 0.02 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1167 - - gmx:100805628 1448.72
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g1539 6 30452847 30472840 Vra5g1167 5 18093354 18102247 PCT