Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1150 ATGGCTGTGCTGCTGAGAATGGCTCAGCCTCACAATGGCAACACCAGCAACACTTTCAACCAGACTTTGGTCCTTCATGACTTTCTGGGCATGAAGTCCGCAGCTGATTCTCCAAAAACCACCGATGTAAGGTTGTCGGAACCGTCGGCCTCCGCCTCCTCCGCTGGTGGACGTGGCCCTTTCTCAGCCACCTCCGACATCGCTTCTGAGAAACAGATAGGAAACCATCTTGAGGGAGTTCCTTTCTATGGCCCAAGGAGTGATCTTTCTGGTGCTGAGATCAGTAACAGATTAGTGGGAAGCAAGAGAAGTAATTCTGATTCCGCTTTTACTGGTTCGTCCAGAGATGCCTTCCAAATGGTCCCCGATTCATATCAAAACTCACATTTGATGAAGGTTCTCCGGAATGCAGCTGGAGATAGGTCTAGAAGGCCCAATGATGAGGATGTGTTACTTGGTATGCAGTCAATGAAACAATCTTCTTCTCAGATATTTCAGCCTCCCACCAGCGCTAAGATTGATGCCAATAAGTGGGAACGATCTATTCTCATGAATGTTGGCCCTTCCATGCAGTATCCGCCCCGTGGAGGGCAATTGGCACCTTTTGTCCACCAAATGGCCTCAAGCAAGATCAGGGATACCAATGCTGGCCCTTCCTTCATTTCTCAGTCTGCTGCTGACGAAGGATCTAGAACTGGAATCAAGGGCCCTGGAATTTTAAGTTCTATAAACGTTGCTGCTATGAGTGCTGAGAAAACTCCTTCTGCTGTGATGCTTGGTGGCAGCAGGCCAAAGCCTGGAAGTAATATCATAGAATCATCCACGCCTCCAAGCAGTCAACCCACCCTAACTTCTGCCAGCCGTCAGATGACAATATTTTATGGAGGCCAAGCTCATGTTTTTGATGATGTCCATCCTCATAAGGCAGATGTTATAATGGCTTTGGCCGGGTCAAATGGCGGATCTTGGTCGACTGCGTTCTCGCCTAAATCTGCTGTGAAAATGGTTAGTGATGGGAACCTGCACAGTGGAGAAAATGAAACAGGTGTAGTGAATAATGTAGCATTCCCACAGGAGCTTCATGGGAAGCTGTCTATTACTGCAAGTTCTAGCCATGCCATGGGGCCTGGTGATCGAGTAACTACTCCTGCAGGGGCACACCAAGGTAGCGTTTTTACTAAAGATACCAGAAATCCAGTTCAAGCATCAGATCCCAGTGCTGAAGACAAAAGAGGACAATGA 1242 0.4807 MAVLLRMAQPHNGNTSNTFNQTLVLHDFLGMKSAADSPKTTDVRLSEPSASASSAGGRGPFSATSDIASEKQIGNHLEGVPFYGPRSDLSGAEISNRLVGSKRSNSDSAFTGSSRDAFQMVPDSYQNSHLMKVLRNAAGDRSRRPNDEDVLLGMQSMKQSSSQIFQPPTSAKIDANKWERSILMNVGPSMQYPPRGGQLAPFVHQMASSKIRDTNAGPSFISQSAADEGSRTGIKGPGILSSINVAAMSAEKTPSAVMLGGSRPKPGSNIIESSTPPSSQPTLTSASRQMTIFYGGQAHVFDDVHPHKADVIMALAGSNGGSWSTAFSPKSAVKMVSDGNLHSGENETGVVNNVAFPQELHGKLSITASSSHAMGPGDRVTTPAGAHQGSVFTKDTRNPVQASDPSAEDKRGQ* 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1150 413 SMART tify_2 283 318 IPR010399 -
Vra5g1150 413 MobiDBLite consensus disorder prediction 36 64 - -
Vra5g1150 413 MobiDBLite consensus disorder prediction 386 403 - -
Vra5g1150 413 MobiDBLite consensus disorder prediction 39 64 - -
Vra5g1150 413 Pfam tify domain 285 317 IPR010399 -
Vra5g1150 413 MobiDBLite consensus disorder prediction 368 413 - -
Vra5g1150 413 ProSiteProfiles Tify domain profile. 283 318 IPR010399 -
Vra5g1150 413 PANTHER PROTEIN TIFY 8 52 411 - -
Vra5g1150 413 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 52 411 IPR040390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1150 Vra-Chr5 17971094 17978516 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g1150 23 316 Tify Gene Family AT4G32570 41.613 3.14e-58 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Vra5g1150 tify 2.6e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1150 - - gmx:100819293 697.967
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g1536 6 30395312 30399607 Vra5g1150 5 17971094 17978516 PCT