Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1148 ATGGATAAAGTAGATAAAGCGTGTGCCAAAGATGAAGAACGTCCAATCCGTATCACCAGAGCAAAGACTAGAGCTTTGAGAGGAATTCCTCCTCCCCCCTCAAGACCTTCCTCTGGAAATGAACAGAAAAACATGTCTCGAGCAAATTCCAAAAGAGCAGCCGCTTCTGGAGATCAAACTTATGTGGTTGTTCCTGCTCTTATCCAAAATAAGAGAAGGGCAGTTCTGACAGATGTAACAAATATACATGATAAGTGTACTGATGCATCAAAATTTACGGCCAAAGGAGTTTATACAAAGAAAAGCACAAAACTAGCTTCAGGCATTACGTCTGAATTCTCATCAACACAAGAGAATGTTAGAGCAAAGTTAGTTGAAGATTTATCGACAATAAGGATGGTAGAATCCGATGACTCCATAAGTGAACGTGTTATACCAGGCACCAAGCCGTCAATGCAAGATTCTGTGAAGTCCGATGAAGTTCAGAGCTCTACAAAAAATGATGTAGATGTGATTTCTGAGAAGTCAGGAACCTCAAACTCCCTTGATATAGTGGACATTGATTCAGAGTTAAGGGATCCTCAAATTTGGAGTTCTTATGCCTCAGACATGTACAACAACATTCGAGTCACAGAGCTTGAAAGGAAACCATCGACCAACTACATGGAGAAGTTGCAGACAGATATTAATCCAAGCATGCGTGGAATTCTGGTAGATTGGCTTGTGGAGGTTTCTGAGGAATACAGATTGGTTCCAGATGCCCTTTACCTGACAGTGAACCTCATTGATCGGTATCTCTCAACTGAGTTCATTCAGAAGCAAAGGCTACAGTTGCTGGGTGTTACTAGCATGCTAATTGCATCAAAGTACGAAGAGATGTGCCCACCTCGAGTGGAAGAATTCTGCTTCATCACAGATAACACATACACAAAGGAAGAGGTACTGAAAATGGAGAGAGAAGTGCTGAATGTGATTCATTTTCAGTTATCTGTTCCCACAATCAAAACATTTCTGAGGAGATTCATCCAAGCAGCACAATCTTCTTACAAGGCTCCTTGTGTTGAACTGGAGTTTTTGGCAAATTATTTAGCAGAGCTTGCTCTTGTTGAATATAGCTTCTTCCAATTTCTTCCTTCCCTTGTAGCTGCATCTGCCGTGTTCCTTGCCAGATGGACCCTGAACGATTCAGAACATCCATGGAATCCAACTTTGGAGCACTATACGAACTACAAAGCTTCAGAGCTCAAAACTGTTGTTCAAGAACTGCAAAAATTGCAATTTAATTCCAAAGGCTGTCCCCTCAATGCTGTTCGCGATAAGTATAAACTACAGAAGTTCAATTGTGTGGCAAACTTGTCCCCAAAACCGGTGCAGTCACTCTTCCAGGCCCAAGTGTAA 1398 0.417 MDKVDKACAKDEERPIRITRAKTRALRGIPPPPSRPSSGNEQKNMSRANSKRAAASGDQTYVVVPALIQNKRRAVLTDVTNIHDKCTDASKFTAKGVYTKKSTKLASGITSEFSSTQENVRAKLVEDLSTIRMVESDDSISERVIPGTKPSMQDSVKSDEVQSSTKNDVDVISEKSGTSNSLDIVDIDSELRDPQIWSSYASDMYNNIRVTELERKPSTNYMEKLQTDINPSMRGILVDWLVEVSEEYRLVPDALYLTVNLIDRYLSTEFIQKQRLQLLGVTSMLIASKYEEMCPPRVEEFCFITDNTYTKEEVLKMEREVLNVIHFQLSVPTIKTFLRRFIQAAQSSYKAPCVELEFLANYLAELALVEYSFFQFLPSLVAASAVFLARWTLNDSEHPWNPTLEHYTNYKASELKTVVQELQKLQFNSKGCPLNAVRDKYKLQKFNCVANLSPKPVQSLFQAQV* 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1148 465 MobiDBLite consensus disorder prediction 1 20 - -
Vra5g1148 465 SUPERFAMILY Cyclin-like 192 329 IPR036915 -
Vra5g1148 465 SMART cyclin_7 239 323 IPR013763 -
Vra5g1148 465 SMART cyclin_7 336 424 IPR013763 -
Vra5g1148 465 Gene3D - 217 330 - -
Vra5g1148 465 PANTHER CYCLINS 50 461 IPR039361 -
Vra5g1148 465 MobiDBLite consensus disorder prediction 38 56 - -
Vra5g1148 465 SMART Cyclin_C_2 332 455 IPR004367 -
Vra5g1148 465 Pfam Cyclin, C-terminal domain 332 454 IPR004367 -
Vra5g1148 465 SUPERFAMILY Cyclin-like 331 454 IPR036915 -
Vra5g1148 465 PIRSF Cyclin_A_B_D_E 21 464 IPR039361 -
Vra5g1148 465 MobiDBLite consensus disorder prediction 139 170 - -
Vra5g1148 465 MobiDBLite consensus disorder prediction 1 56 - -
Vra5g1148 465 CDD CYCLIN 233 322 IPR013763 -
Vra5g1148 465 CDD CYCLIN 330 422 IPR013763 -
Vra5g1148 465 ProSitePatterns Cyclins signature. 234 265 IPR006671 -
Vra5g1148 465 PANTHER CYCLIN-A2-4 50 461 - -
Vra5g1148 465 Pfam Cyclin, N-terminal domain 203 329 IPR006671 -
Vra5g1148 465 MobiDBLite consensus disorder prediction 146 170 - -
Vra5g1148 465 Gene3D - 203 451 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1148 Vra-Chr5 17951157 17956948 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g1148 9 461 Core Cell Cycle Gene Families AT5G25380 50.220 3.27e-151 436
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1148 K06627 - gmx:547780 697.967
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g1533 6 30352592 30358284 Vra5g1148 5 17951157 17956948 PCT