Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1140 ATGCACTCCAAATCGGCGCAGTCATCGTTTCGGGATCGGACGCTTGAATTTCATAGCATTGCGGAGAGGTTGAAGAAGTCGGGATCAGCGCCGAATGGACAAAGCAGCAATTTATTGGAGGAGCAGCGATCCGCAATTACAAATCAATCAGAGTTCAACAGAAGAGCTTCCAAGATTGGCTTCGGGATTCACCAAACGTCTCAGAAGCTCGCCAAGCTTGCCAAGTTGGCTAAGAGGACCTCGGTTTTCGATGACCCTACCATGGAAATCCAAGAGCTTACGGGGGTAATTAAGCAAGATATCACTGCGTTAAACTCTGCGGTTGTGGATCTTCAATTGCTTTGCAATTCAAGGAACACGAGTGGGAACGCTTCCACCGACACCACTATGCATTCAACAACGGTGGTTGATGACCTCAAGACGCGGCTGATGGGCGCCACTAAAGAGTTTAAAGATGTTCTCACCATGCGAACTGAGAATTTGAAAGGGCACGAGAATAGAAGACAGCTGTTTTCGGCCTCTGGTTCTAAGGATTCTGCAAATCCTTTTGTCCGGCAACGGCCGTTGGCCACCAGATCGGCTGCTAGTAGTTCTAATGCCCCTGCTCCACCATGGGCCAGTGGGTCATCTTCATCTCAGTTGTTTGCTAAAAAACAGGTTGATGGGGAGGGTCAACCGTTGCTGCAACAGCAGCAACAAGAGGTAGCCCCATTGCAAGATAGCTACATGCAAAGCAGAGCTGAAGCTCTTCAGAATGTTGAGTCCACTATTCACGAGCTTAGCAACATCTTTAATCAACTAGCAACACTTGTTTCCCAACAGGGAGAAGTTGCCATCAGGATTGATGAAAACATGGATGATACATTGGCAAACGTAGAGGGGGCTCAAGGGGCTTTATTAAATAATCCCGATGACAGAGAAATGAAAACGAGGACACAAATGACGCCTTTCTTACTGGTGATAAGCGTTTTGTATTTCATTAATATTTCTTTCTCCAAATCTATATTCATTCCGGCAGATTTTAGCGTAGGACCAAGTTTGTCAAATGTTATACTTGTACGTATCGAGGTTGAGTACTGGGTGCATTGCATATTGTCCATTTATCTTTCTGTGACGGATGGTTTTTATCTAATGGAGACTTCCTGTCACATTTGTCCATATATTTATATTACCAGCAAAGAGAATCAGTAA 1191 0.4509 MHSKSAQSSFRDRTLEFHSIAERLKKSGSAPNGQSSNLLEEQRSAITNQSEFNRRASKIGFGIHQTSQKLAKLAKLAKRTSVFDDPTMEIQELTGVIKQDITALNSAVVDLQLLCNSRNTSGNASTDTTMHSTTVVDDLKTRLMGATKEFKDVLTMRTENLKGHENRRQLFSASGSKDSANPFVRQRPLATRSAASSSNAPAPPWASGSSSSQLFAKKQVDGEGQPLLQQQQQEVAPLQDSYMQSRAEALQNVESTIHELSNIFNQLATLVSQQGEVAIRIDENMDDTLANVEGAQGALLNNPDDREMKTRTQMTPFLLVISVLYFINISFSKSIFIPADFSVGPSLSNVILVRIEVEYWVHCILSIYLSVTDGFYLMETSCHICPYIYITSKENQ* 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1140 396 MobiDBLite consensus disorder prediction 190 214 - -
Vra5g1140 396 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 240 302 IPR000727 -
Vra5g1140 396 Pfam Syntaxin-5 N-terminal, Sly1p-binding domain 7 26 IPR021538 -
Vra5g1140 396 MobiDBLite consensus disorder prediction 188 214 - -
Vra5g1140 396 PANTHER SYNTAXIN-32-LIKE 2 301 - -
Vra5g1140 396 CDD SNARE_syntaxin5 243 301 - -
Vra5g1140 396 SMART tSNARE_6 235 302 IPR000727 -
Vra5g1140 396 Gene3D - 46 295 - -
Vra5g1140 396 SUPERFAMILY t-snare proteins 49 295 IPR010989 GO:0016020|GO:0016192
Vra5g1140 396 ProSitePatterns Syntaxin / epimorphin family signature. 246 285 IPR006012 GO:0005484|GO:0006886|GO:0016020
Vra5g1140 396 PANTHER SYNTAXIN 2 301 IPR045242 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1140 Vra-Chr5 17880133 17886396 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g1140 1 327 SNARE and Associated Proteins AT3G24350 56.986 3.84e-116 341
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1140 K08490 - gmx:100777961 473.396