Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1139 ATGCAAACAAACCACTATCCACTACACCAATTTTCCAGATCCCCTTGTCTTCCCGAACGAATTGCAACATATGATTCATTAACATACACACAATCACCGAAAAAGAATTCCAAATCCAAATTCAATTTGAGCTTTGCCCCGTGTTGTTCACGTGTGCCTGATTACTTTCAAGGATCTCAGATTCTCGGAGCCAACCATTGCATTGAATTTCCAAGACGGGAAAAGAAAATGTACGTGAAAGCGGCACAGTCATCGTTCCGGGATCGGACGCATGAATTCCACAACATCACTGAGAGGTTGAAGAAGTCCGGATCAGGGCCCACTGGGCCCAGCAGTAGCAGTCATTCCAGATCGGAGGAACAGCGATCGGCGATCGCAAATCAATCGGATTTCAATAGAAGGGCCTCCAAAATTGGCTTCGGAATTCACCAAACGTCTCAGAAGTTAGCCAAGCTCGCCAAGCTGGCGAAAAGGACTTCTGTTTTTGATGACCCTACCATGGAAATCCAAGAGCTTACTGGTGTTATTAAGCAGGATATCACTGCTTTAAACTCTGCGGTGGTGGATCTTCAGTTGCTGTGCAATTCTAGGAATGAGAGTGGAAATGTTTCTGTGGACACAACGAGCCATTCGAGCACCGTGGTGGATGACTTGAAGACGCGGTTGATGAGCGCCACCAAAGAGTTTAAGGATGTTCTCACCATGAGAACTGAGAACATGAAAATGCACGAGAATAGAAGACAGTTGTTTTCTTCTTCTGCTTCTAAGGATTCAGCTAATCCTTTCATCCGGCAACGGCCCTTGGCTGCTAAGGCGGCAGCTAGTAGTTCTAATGCCCCTGCGGTTCCCTGGGCTAATGAGTCGCCATCTTCATCTCAGGTGTTTCCCAAGAAGCGAATGGACACGGAGAGTCAACCATTGTTGCAGCAGCAGCAGCAGCAGGATGTAGTTCCATTACAAGACAGTTACATGCAAAGCAGAACCGAAGCTCTTCAGAATGTTGAGTCCACTATTCATGAGCTTAGCAGCATTTTTAATCAGCTAGCGACGCTTGTTTCCCAACAAGGAGAGATTGCCATCAGGATTGATGAAAACATGGATGATACATTGTCAAACGTAGAGGGAGCGCAAGGGGCTTTGTTGAAATATCTGAACAGCATATCTTCTAATCGGTGGTTGATGATCAAAATTTTCTTTGTATTGATATTTTTCCTTATGGTTTTCTTATTTTTTGTGGCATAA 1242 0.4501 MQTNHYPLHQFSRSPCLPERIATYDSLTYTQSPKKNSKSKFNLSFAPCCSRVPDYFQGSQILGANHCIEFPRREKKMYVKAAQSSFRDRTHEFHNITERLKKSGSGPTGPSSSSHSRSEEQRSAIANQSDFNRRASKIGFGIHQTSQKLAKLAKLAKRTSVFDDPTMEIQELTGVIKQDITALNSAVVDLQLLCNSRNESGNVSVDTTSHSSTVVDDLKTRLMSATKEFKDVLTMRTENMKMHENRRQLFSSSASKDSANPFIRQRPLAAKAAASSSNAPAVPWANESPSSSQVFPKKRMDTESQPLLQQQQQQDVVPLQDSYMQSRTEALQNVESTIHELSSIFNQLATLVSQQGEIAIRIDENMDDTLSNVEGAQGALLKYLNSISSNRWLMIKIFFVLIFFLMVFLFFVA* 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1139 413 PANTHER SYNTAXIN-32-LIKE 78 412 - -
Vra5g1139 413 ProSitePatterns Syntaxin / epimorphin family signature. 327 366 IPR006012 GO:0005484|GO:0006886|GO:0016020
Vra5g1139 413 MobiDBLite consensus disorder prediction 101 128 - -
Vra5g1139 413 CDD SNARE_syntaxin5 324 402 - -
Vra5g1139 413 Pfam SNARE domain 357 409 IPR000727 -
Vra5g1139 413 Gene3D - 123 376 - -
Vra5g1139 413 MobiDBLite consensus disorder prediction 277 304 - -
Vra5g1139 413 MobiDBLite consensus disorder prediction 90 128 - -
Vra5g1139 413 SMART tSNARE_6 316 383 IPR000727 -
Vra5g1139 413 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 321 383 IPR000727 -
Vra5g1139 413 MobiDBLite consensus disorder prediction 279 304 - -
Vra5g1139 413 Pfam Syntaxin-5 N-terminal, Sly1p-binding domain 82 102 IPR021538 -
Vra5g1139 413 PANTHER SYNTAXIN 78 412 IPR045242 -
Vra5g1139 413 SUPERFAMILY t-snare proteins 128 376 IPR010989 GO:0016020|GO:0016192
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1139 Vra-Chr5 17874768 17878908 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g1139 77 413 SNARE and Associated Proteins AT3G24350 63.760 1.06e-143 412
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1139 K08490 - gmx:100811494 493.426