Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1135 ATGGGAGTGGTGGCAGTATTGCACACTGAGTCTCTGCAGCTTGACTGCAAGGACACGAAGCATGTGACTGAGAAAGACGTTTATAATCATCTAACATCAAACGAAGAGCACCTACTTGGAGAAGAATCAAGTCAATCAACAAATTACCAAAAGATCAATACTATGCGTGAGAGAGGATATATGGAATATGGATGTCAACATTACCGGAGAAGATGCCGTATTAGGGCCCCCTGTTGCAATGAGATTTTTAATTGCCGCCATTGTCACAATGAGGCAAAAAATAATATCAACATTGATCAGAAGCACAGACACGATATTCCCCGCCATCAAGTTAAACAGGTTATATGTTCACTTTGTGAGACCGAACAAGAGGTTCAGCAAAACTGTATTAACTGTGGTGTTTGTATGGGCAAGTACTTCTGTGGGACCTGCAAGCTCTTTGATGATGATGTATCGAAGAAGCAATATCATTGCAGTGGCTGTGGAATTTGCAGAACTGGAGGATGTGAAAATGTCTTCCACTGCTACAAATGTGGTTGTTGCTATCCAACTCAGATGAAAAACAGTCACCCTTGTGTGGAAGGAGCAATGCATCACGATTGCCCCATTTGTTTCGAGTATTTGTTTGAATCTGTGAATGATGTCCTTGTTTTGCCCTGTGGACATACAATACATAAGAGCTGCCTGAATGAAATGAGGGAACATTTCCAGTATGCATGCCCTCTCTGCTCGAAGTCAGTTTGTGACATGTCAATGATTTGGGAGAAGCTTGACATGGAGATTGCTGCTACACCAATGCCTGAAGCATATCGAAACAAAATGATTTGGATCCTTTGCAATGATTGTACTAAAACTTCTCACGTCCAATACCATCTTGTTGCCCAAAAGTGCATGAACTGCAAATCCTACAACACACGGCAAATAAGAGGCTGA 933 0.4191 MGVVAVLHTESLQLDCKDTKHVTEKDVYNHLTSNEEHLLGEESSQSTNYQKINTMRERGYMEYGCQHYRRRCRIRAPCCNEIFNCRHCHNEAKNNINIDQKHRHDIPRHQVKQVICSLCETEQEVQQNCINCGVCMGKYFCGTCKLFDDDVSKKQYHCSGCGICRTGGCENVFHCYKCGCCYPTQMKNSHPCVEGAMHHDCPICFEYLFESVNDVLVLPCGHTIHKSCLNEMREHFQYACPLCSKSVCDMSMIWEKLDMEIAATPMPEAYRNKMIWILCNDCTKTSHVQYHLVAQKCMNCKSYNTRQIRG* 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1135 310 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 195 246 IPR013083 -
Vra5g1135 310 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 20 310 - -
Vra5g1135 310 SUPERFAMILY CHY zinc finger-like 62 136 IPR037274 GO:0008270
Vra5g1135 310 ProSiteProfiles Zinc finger CHY-type profile. 58 134 IPR008913 GO:0008270
Vra5g1135 310 SMART ring_2 201 243 IPR001841 -
Vra5g1135 310 Gene3D - 272 310 - -
Vra5g1135 310 Pfam CHY zinc finger 65 146 IPR008913 GO:0008270
Vra5g1135 310 ProSiteProfiles Zinc finger CTCHY-type profile. 136 200 IPR017921 -
Vra5g1135 310 ProSiteProfiles Zinc finger RING-type profile. 201 244 IPR001841 -
Vra5g1135 310 SUPERFAMILY RING/U-box 200 251 - -
Vra5g1135 310 SUPERFAMILY Zinc hairpin stack 137 194 IPR037275 -
Vra5g1135 310 Pfam Ring finger domain 200 243 IPR001841 -
Vra5g1135 310 PANTHER CHY-TYPE/CTCHY-TYPE/RING-TYPE ZINC FINGER PROTEIN 20 310 - -
Vra5g1135 310 Pfam Zinc-ribbon 248 306 IPR039512 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1135 Vra-Chr5 17830374 17837066 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g1135 54 310 C2H2 Transcription Factor Family AT3G18290 38.403 3.98e-54 188
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1135 K10144 - gmx:100812023 613.224