Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1132 ATGTCGATTGCGTCTAAAGAGAGAAGAAGATGCTCAAGCAGCGAAATGGCCTCTGTTTCAAGTACCATCTTTCCAGCATTTGGCACCCCCATCTTTGTTGTAGAAGGTTACTCCAACCTAAGAAAACACGTCATTGCTCCTTATGACCGTATATATCAATTGTGGCAAACGTTCGTAGTGGCTTTGGTAGTGTACTCTGCATGGGCGTCTCCATTCGAGCTAGCTTTCAGAGATATGTTAGTTGGGTCATATTTGACCGTTGTTGATCTCCTTGTCGATGCCTTCTTTGCAATTGATATAATCCTTACTTTCTTTGTGGCTTACTTCGATACATCAACTTATCTCCTCGTCGACGATCATAAGAAGATTGCTCTCAGGTACGTCAAAAAGTTGCACTTCACCATGGATCTAGCCTCCACTCTGCCAATTGAGAAGATATATCAAATTCTGACGGGCAAGCCAACCAGAAGCGAGGTATTTGGTTTCCTGATTATGCTAAGACTCTGGAGATTGAGGCGGGTTAGCGAATTCTTCGCGAGGCTAGAGAAAGACATACGAATCAATTATTCTGCAACAAGATTTTGCAAACTTATATGTGTTACACTATTTGTAGCACACTTCGCAGGCTGCATGTTTTTTTGGTTGGCTGTCCAGCACAAGACACCGAAACACACATGGCTCGGGAACAAAACACAGGATTTTCATGAATTGGGCGTCGGGTTGGGTTACACTTATTCTGTGTACTGGTCTGTTGCGACCCTTACCACCGTTGGATATGGAGATTTTTATGCAGTAAATTTAACGGAGATGCTTTTCTGCATTTTTTACATGCTCTTTAACATCGGCCTCGGTGCATATATTATTGGAAACATGACAACTCTGTTGGTTCATAGCTCTGTCGGAACCTTTGCCGTGGCTTCACAGAGGGATGTCTTCAACAAAATATTACAGTATGCAAACAAAAATAGACTCCCGGGACGATTAAAGGAGCAAATGTTGGCACACATGCAATTGAAATTTAAGACTGCAGAGTTACAGCAAGAAGTGTTACACGACCTACCTAAAACTATAAGATCCAGTATTGCTCAGCATCTTTTCAAAAACATTGTTGAAACAGCATATTTATTCAAAGGAGTTTCTGATTATTTTATCACCCAGCTGGTGTCAGAAACGAAGGCAGAATACTACCCATCTAAGGTTGACATTATCTTGCAAAATGAGATGCCAAAATATTTCTACATCTTGGTATCTGGGTCACTGGATGTGTTGATATACAATACTGGGTCTGAACAGTTTTTATTCGAACTAGAAACTGGAGACATGGCAGGAGAAATAGGCGTGATGTTTAATATTCCACAACCTTTTACAGTAAGAAGTAGAGGGCTCTCCCAGGTCATACGAATCAATCATCATCACTTCAAGCAGATGGTGCAACCATTTAGTGACGATGGGAAGGCAATCATGTACAACTTTATTCAGCATTTGAAGGGCCTCAAAAGCAAGGTGCTAGAAGAAATATCGTATGTAACAGAATTGCTGGGTTACCTTGAGCATCTGAGACAAAATGAGGGTACACTTCATGAAGTTTCAAGATATCAAGATCCATATAAAGAAGGAAAAACAGGAAATTCCAAACCACTGAGAAGCCCAGTCCCCGTTAGAGTTACAATCCACGGACACCATCCCAATGAAAACAAAAGGGGAAATGGATCAACGCCAAAGCTCATACTTCTCCCAAATTCGATAGAAGATGTTTTCAAAGTTGCAGAGAGAAAATTCGGAAAAAGAGGAAGCAAAATTCTCATGGCTGACGGCACAGAAGTAGAACAATTAAACGCGATAAGGGAGAATGATGAGTTGTATATCCTCTAA 1872 0.4108 MSIASKERRRCSSSEMASVSSTIFPAFGTPIFVVEGYSNLRKHVIAPYDRIYQLWQTFVVALVVYSAWASPFELAFRDMLVGSYLTVVDLLVDAFFAIDIILTFFVAYFDTSTYLLVDDHKKIALRYVKKLHFTMDLASTLPIEKIYQILTGKPTRSEVFGFLIMLRLWRLRRVSEFFARLEKDIRINYSATRFCKLICVTLFVAHFAGCMFFWLAVQHKTPKHTWLGNKTQDFHELGVGLGYTYSVYWSVATLTTVGYGDFYAVNLTEMLFCIFYMLFNIGLGAYIIGNMTTLLVHSSVGTFAVASQRDVFNKILQYANKNRLPGRLKEQMLAHMQLKFKTAELQQEVLHDLPKTIRSSIAQHLFKNIVETAYLFKGVSDYFITQLVSETKAEYYPSKVDIILQNEMPKYFYILVSGSLDVLIYNTGSEQFLFELETGDMAGEIGVMFNIPQPFTVRSRGLSQVIRINHHHFKQMVQPFSDDGKAIMYNFIQHLKGLKSKVLEEISYVTELLGYLEHLRQNEGTLHEVSRYQDPYKEGKTGNSKPLRSPVPVRVTIHGHHPNENKRGNGSTPKLILLPNSIEDVFKVAERKFGKRGSKILMADGTEVEQLNAIRENDELYIL* 624
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1132 623 PANTHER POTASSIUM CHANNEL KAT3 20 622 - -
Vra5g1132 623 SUPERFAMILY Voltage-gated potassium channels 47 296 - -
Vra5g1132 623 PRINTS EAG/ELK/ERG potassium channel family signature 89 99 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vra5g1132 623 PRINTS EAG/ELK/ERG potassium channel family signature 100 109 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vra5g1132 623 PRINTS EAG/ELK/ERG potassium channel family signature 243 260 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vra5g1132 623 PRINTS EAG/ELK/ERG potassium channel family signature 269 280 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vra5g1132 623 PRINTS EAG/ELK/ERG potassium channel family signature 287 296 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vra5g1132 623 ProSiteProfiles cAMP/cGMP binding motif profile. 375 494 IPR000595 -
Vra5g1132 623 ProSiteProfiles KHA domain profile. 554 623 IPR021789 -
Vra5g1132 623 SMART cnmp_10 375 492 IPR000595 -
Vra5g1132 623 Gene3D Jelly Rolls 342 500 IPR014710 -
Vra5g1132 623 CDD CAP_ED 375 488 IPR000595 -
Vra5g1132 623 Pfam KHA, dimerisation domain of potassium ion channel 554 622 IPR021789 -
Vra5g1132 623 Pfam Cyclic nucleotide-binding domain 396 478 IPR000595 -
Vra5g1132 623 PANTHER POTASSIUM CHANNEL AKT1 20 622 IPR045319 GO:0005249|GO:0006813
Vra5g1132 623 SUPERFAMILY cAMP-binding domain-like 309 495 IPR018490 -
Vra5g1132 623 Gene3D - 52 297 - -
Vra5g1132 623 Pfam Ion transport protein 53 294 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1132 Vra-Chr5 17805011 17812077 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g1132 8 622 Ion Channels AT4G32650 54.272 0.0 639
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1132 K21867 - gmx:100794620 1010.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g1132 5 17805011 17812077 Vra5g1132 5 17805011 17812077 ECH