Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1128 ATGGAGGATCAAGCGAATCAAGCGCCATCGCAGCACGATGAAGAGGAGGATTCTAAGAAGGAAGAAGATGAATTGGTTACGAAGGTTAACAAACTCATGGAGAAGATCACTTCTGCGCCTGATAACCCTAACGCCACCGTTCTCCATGCTCTTTCCTCTATTCTCGAAACGCAAGAGTCAAGATACATGGATGAGAATGGCCATTCTTCCTCCAGTACTGCCCGTGCTGCGCATGTCATTGGTCGTCTTGGCGGTTTAATTCGGGAAAATGATGAGTTTTTTGAGTTAATATCTTCAAAGTTTCTGTCAGAAACAAGATACTCAACTTCTGTTCAAGCTGCTGCTGGAAGACTTCTCCTATGCTGTTCACTAACATGGATTTATCCTCATGTTTTTGAAGAACCGGTCATGGAAAACATAAAAAATTGGGTGATGGATGATAACACCGGGCTGTCTTCTGAAGAGCAGAATCTGAAGCATAGTTCTGGGAGAAGGGAGGCATCTGACTCTGAAATGTTGAAAACCTACTCTACTGGACTTCTTGCTGTTTGTTTGGTTGGTGGAGGTCAAATTGTTGAAGATGTATTGACATCTGGCTTGTCAGCTAAGCTTATGCGATATCTTCGTTTATGCGTTCTGGGAGAGACAAGTAGCAACCAGAAAGATGTTACTCATATGACAGAGAGTAGGCATGCATCTGCGAATACCTCAGGGAGAGCTAGAGATGATGGTCGTGGCAGATTTCGCCAGCTCCTTGAACCAAATCATCTGGATGATACTAGGATTATTGATGAGAGATCTTTAGATGATGTAAGTCTTGAAAGGGCTCCAGATAGAAGCATTAGTGGACAAACACATCAAGAAGGGTCTTGGATAGAAGGTGAACCACCTGATGGGCTTGGTGAAGGTGTTGATGTCCAGGAGGTAGATTCTGATGGGGAAGATAGATGGCGTTACAGAGATATACGTGATGGAAGGATAAAATTCAGTGAGCATGATGACAATGTTAGAGATGATTCTTCAAGGCGGCGTCCAAACCGTGGATGGGGAAGATCTAAAGGGAAAGGAAGGGTCACTGAAGGCACTGTAGAGAGTGATTCCATTTTATCATCTCCTGGTTCTGGTAGTAGATTAGTACAGGGTCGGAGAGATAGAAGTGTAATGAGGAATGCTGATGTTAGGAGGGTGGCTGAGTCTAAGAAGACCCTTGGCAGGAGCTCTTTGGAGTCTTCTGGTTTTGAAAGAGATGATCATGATGATTGTTTCAATGAATGCCGAATTGGAAATAAAGATATAACTGATCTTGTCCGGAAAGCAGTTCGAGCTGCTGAAGCTGAGGCTAGATCAGCCAATGCACCCGAAGAAGCTGTCAAAGCAGCTGGTGATGCTGCTGCTGACCTGGTTAAAACTGCAGCTTCAGAGGAATATAAATCCTCTGATAATGAAGAAGCAGCTTTTTTGGCTGCTTCTAAAGCTGCATCAACTGTTATTGATGCTGCAACTGCAGTTGAAGTTTCAAGGAGCTCTATTGGCAACAATACTGTAACAGAGAACGAGAGTGGCAAAGAAGCAGAAACTAATGAGGATGTGGAAGAGTACTTCATCCCTGATACTCAATCACTTGCACAGTTGAGGGAAAAATATTGCATTCAGTGTCTTGAGTTACTTGGAGAATATGTAGAAGTGCTTGGCCCTGTGTTGCACGAGAAGGGAGTTGATGTGTGTCTTGCACTTCTGCAGCAAAATTCTAAACATCGGGAGCCATCCAAGGTTGCTTTGCTGTTACCCGATGTCATGAAGCTAATATGTGCTTTGGCTGCACATAGGAAATTTGCTGATGCACTTTTTGTGGACCGAGGGGGAATGCAAACGCTTCTTGCTGTCCCTAGAATGGAACAGACTTTCTTTGGTCTTTCTTCTTGTCTATTCACTATTGGCTCTCTTCAGGGTATAATGGAAAGGGTTTGTGCTCTTCCATCACAAGTTGTTTATCACGTTGTTGAGTTAGCTCTACAACTTCTTGACTGCAATCAAGATCAAGCCCGCAAGAATGCTGCATTGTTTTTTGCTGCTTCGTTTGTCTTCAGAGCTGTTCTTGATGCCTTTGATTCCCTAGATGGATTACAGAAATTACTGGGCCTTCTAAATGATGCTGCTTCTGTAAGATCAGGAATAAATTCTGGAGCCTTGAGTTTATCTAACTCAGGATCACTCCGAAATGATCGATCATCTGCGGAAGTGCTGACATCATCTGAGAAGCAGATAGCCTATCACACTTGTGTTGCTTTGAGGCAATATTTCAGGGCCCATCTCCTTGTGTTAGTGGACTCCATTCGTCCTAACAAGAGCAATCGTAGTGCTGCTAGAAATATACCAAGTGCAAGGGCAGTGAACAAACCCCTTGATATTAGTAATGAGGCAATGGATGGAGTATTCCTACAATTACAAAAGGACCGGAAGCTAGGTCCTGCATTTGTTAGAACACGTTGGCTAGCTGTTGAGAGGTTCTTGGCATCTAATGGACATGTTACCATGTTGGAGTTATGTCAGGCCCCACCTGTGGAACGATATCTGCATGATCTGCTTCAGTATGCTTTGGGTGTTCTGCACATTGTTACATTGGTACCTAGCAGTCGTAAGATGATCGTGAATGTAACTTTAAGCAACAATCGTGCTGGTATTGCAGTAATTTTGGATGCTGCAAATGTAGCTAGTAGTCATGTGGACCCAGAGATAATTCATCCAGCATTAAATGTTTTAGTCAATCTTGTTTGCCCTCCTCCTTCAATAAGCAATAAACCGGCTATGGTTGCACAAGGTCAGCAGTTGCCATCCTCCCAGACATCTAATGGTCCTCCCTCAGAGGCTAGAGATAGAAATGCTGAACGAAGTGTTTCAGATCGAGGTGTTCACTCTACTAGCCAGATTGATCCTAGGGAGAGGAATGGGGAGTCCAATGCTATAGATCGAGGCAGTGCTGCAAGCTTAAGTACACAGGCTGTTGGTAGTACTCCACAAACTCCAGTTGCTTCTGCAACTTCTGGACTGGTTGGCGACCGAAGAATATCTCTGGGTGCGGGAGCAGGTTGTGCAGGCCTTGCTGCACAATTGGAACAAGGATATCGTCAGGCGAGAGAGACTGTCCGATCTAATAATGGTATAAAGGTTCTTTTGCATCTCCTCCAACCACGGATATATTCACCTCCTGCTGCGCAGGACTGTCTTCGGGCTCTAGCGTGTCGAGTCCTGCTTGGATTAGCCAGAGATGATACAATTGCACACATATTGACAAAGCTTCAGGTTGGGAAAAAGCTGTCAGAACTGATTCGGGATTCTGGTAGCCAAACTCCTGGAACGGAGCAGGGTAGGTGGCAAGCTGAACTTTCCCAGGCTGCCATTGAGCTTATTGGGATTGTGACTAATTCAGGCCGTGCAAGTACATTAGCTGCTACTGATGCAGCTACTCCTACTTTAAGGCGCATAGAAAGAGCAGCTATTGCTGCTGCTACTCCTATTACTTACCATTCAAGGGAACTTTTGCTTCTAATTCATGAACACCTACAGGCATCTGGATTGGCACAAACTGCTTCTATGTTGCTTAAAGAGGCACAGTTTACTCCTTTGCCATCGTTGGTTCCTCCCTTTTCTCTTGCACAACAGCCCACAACACAGGAAGCTTCTTCAACACAAATTCAGTGGCCCTCTGGTCGTACTCCTTCTGGATTTCTCTCTAACAAATTAAAGTTTAATGCAAAGGATGAGGATGCCGTCTTGAAAAGTGAATCTGTCTCTGCAAAGAAAAAATCACTAACTTTCTCATCATCTTTTCATTCAAGACTCCAACTTCTTGACTCTCAACAATCATCTGTGAGGAAATTGTCAAATACTTCTAAAGAATCTTTAGAAACTAGTTTAGTAGAGACTGGATCGGAATCTTCAGTGAAACATAACATCGATAATGGATCTCAGTTTAAGACTCCAGTAGCTTTGCCAGCAAAACGGAAGTTATCTGATTTGAAGGACATATCAATGTTTTCTTCATCTGGAAAACGATTAAATGTTGGGGATCAAGGACTCCGCTCTCCTGTTTGTTCGAGTGCAATTCGTAAAAGCAGCCTGCAACCTGATGCAGTTGGACTTTTCACCCCAACTTGTAACGTGAAAAATCAACATAGCCGTTGTATGGGTGACTTGGTGGACGAGAATCAGTGCAGTATATCAAATCTATGTCAGATGACACCATCCTCCCAAGTTTTAAACGACCTTCAGCCCAGCAACCCTGAGCGTGTAACATTAGATTCTCTAGTGGTTCAGTATTTGAAGCATCAACATCGCCAATGTCCAGCTCCTATTACAACACTTCCTCCACTGTCACTTCTGCACCCACATGTCTGTCCTGAACCAAAGCGAAGCCTTGACGCACCTTCTAATGTGACCGCTAGGCTTGGTACACGCGAGTTTAAATATATGTACGGTGGAGTACATGGGAATCGCAGGGATCGTCAATTTGTTTACAGTCGATTTAGGCCTTGGCGCACATGTCGGGATGATGCTGGTGCCTTGTTAACATGCATTACATTTGTTGGGGACTCCTCTCATATTGCTGTTGGAAGCCATAATGGGGAGCTCAAATTTTTTGAATCCAACAACAGCAATGTAGTAGAGAGTTTCACAGGTCATCAGGCTCCTTTGACTCTTGTTCAGTCTTTTGTTTCAGGCGAGACCCAGCTATTACTTTCTTCAAGCTCCCAAGATGTTAGATTGTGGGACGCAACTTCAATTTTAGGTGGTCCTACCCATTCATTTGAAGGATGCAGGGCAGCCAGGTTTAGCAATTCTGGGAATGTTTTTGCCGCCCTGTCATCAGAATCTTCCCGGCGGGAGATCCTCTTGTATGATATTCAAACATGTCACTTAGAGTCGAAGTTGACAGATACATTTGCAACTTATACAGGGCGTGGTCACGTTTATTCTTTAATCCATTTTAATCCTTCTGACTCAATGCTGCTTTGGAATGGTGTCTTGTGGGATCGACGTGTCTCTGGTCCTGTTCATCGCTTTGATCAGTTTACAGATTATGGTGGTGGAGGCTTTCATCCTGCTGGCAACGAGGTTATTATAAACTCTGAAGTCTGGGATCTGCGCAAGTTCAGATTGCTACGCAGTGTGCCTTCATTGGATCAAACATCAATAACATTCAATGCGCGTGGTGATGTAATGTATGCTATCTTAAGGAGAAATCTTGAGGATGTAATGTCAGCAGTCCACACACGACGCGTCAAGCATCCTCTTTTTTCAGCTTTCCGCACAGTGGATGCAGTTAATTATTCTGACATTGCAACTATCCCTGTGGATCGCTGTGTTCTTGATTTTGCAACTGAGCCTACAGACTCATTTGTTGGGCTGATTACCATGGATGATCAGGATGAGATGTATGCTTCTGCCAGAATATATGAAATTGGTCGTCGGAGGCCAACGGATGATGATTCTGATCCTGATGATGCTGAAAGTGAGGAGGAAGATGAGGATGACGACGACGACGACGATGGTGATGTCGATCCTCTTTTAGGTCCTGGTCTTGGTGGGGATAGTGGCAGTGATGCTGATGATATGAGCAATGATGACGACGAGGATGATAGTGTGAGTGATCTTGATGAAGATGAGGATGGAGATTTTATTTTGGATGATGTAGACTTTGACGGTGGACCTGGCATATTGGAGATTGTGACAGAAGGTGACGAAGATGATGATGATAGTCAGGTACTTGAATCCTTAAGTAGTGATGATGAGGATTTTGTGGGTAATGGCTTTGGGTATTAA 5820 0.4411 MEDQANQAPSQHDEEEDSKKEEDELVTKVNKLMEKITSAPDNPNATVLHALSSILETQESRYMDENGHSSSSTARAAHVIGRLGGLIRENDEFFELISSKFLSETRYSTSVQAAAGRLLLCCSLTWIYPHVFEEPVMENIKNWVMDDNTGLSSEEQNLKHSSGRREASDSEMLKTYSTGLLAVCLVGGGQIVEDVLTSGLSAKLMRYLRLCVLGETSSNQKDVTHMTESRHASANTSGRARDDGRGRFRQLLEPNHLDDTRIIDERSLDDVSLERAPDRSISGQTHQEGSWIEGEPPDGLGEGVDVQEVDSDGEDRWRYRDIRDGRIKFSEHDDNVRDDSSRRRPNRGWGRSKGKGRVTEGTVESDSILSSPGSGSRLVQGRRDRSVMRNADVRRVAESKKTLGRSSLESSGFERDDHDDCFNECRIGNKDITDLVRKAVRAAEAEARSANAPEEAVKAAGDAAADLVKTAASEEYKSSDNEEAAFLAASKAASTVIDAATAVEVSRSSIGNNTVTENESGKEAETNEDVEEYFIPDTQSLAQLREKYCIQCLELLGEYVEVLGPVLHEKGVDVCLALLQQNSKHREPSKVALLLPDVMKLICALAAHRKFADALFVDRGGMQTLLAVPRMEQTFFGLSSCLFTIGSLQGIMERVCALPSQVVYHVVELALQLLDCNQDQARKNAALFFAASFVFRAVLDAFDSLDGLQKLLGLLNDAASVRSGINSGALSLSNSGSLRNDRSSAEVLTSSEKQIAYHTCVALRQYFRAHLLVLVDSIRPNKSNRSAARNIPSARAVNKPLDISNEAMDGVFLQLQKDRKLGPAFVRTRWLAVERFLASNGHVTMLELCQAPPVERYLHDLLQYALGVLHIVTLVPSSRKMIVNVTLSNNRAGIAVILDAANVASSHVDPEIIHPALNVLVNLVCPPPSISNKPAMVAQGQQLPSSQTSNGPPSEARDRNAERSVSDRGVHSTSQIDPRERNGESNAIDRGSAASLSTQAVGSTPQTPVASATSGLVGDRRISLGAGAGCAGLAAQLEQGYRQARETVRSNNGIKVLLHLLQPRIYSPPAAQDCLRALACRVLLGLARDDTIAHILTKLQVGKKLSELIRDSGSQTPGTEQGRWQAELSQAAIELIGIVTNSGRASTLAATDAATPTLRRIERAAIAAATPITYHSRELLLLIHEHLQASGLAQTASMLLKEAQFTPLPSLVPPFSLAQQPTTQEASSTQIQWPSGRTPSGFLSNKLKFNAKDEDAVLKSESVSAKKKSLTFSSSFHSRLQLLDSQQSSVRKLSNTSKESLETSLVETGSESSVKHNIDNGSQFKTPVALPAKRKLSDLKDISMFSSSGKRLNVGDQGLRSPVCSSAIRKSSLQPDAVGLFTPTCNVKNQHSRCMGDLVDENQCSISNLCQMTPSSQVLNDLQPSNPERVTLDSLVVQYLKHQHRQCPAPITTLPPLSLLHPHVCPEPKRSLDAPSNVTARLGTREFKYMYGGVHGNRRDRQFVYSRFRPWRTCRDDAGALLTCITFVGDSSHIAVGSHNGELKFFESNNSNVVESFTGHQAPLTLVQSFVSGETQLLLSSSSQDVRLWDATSILGGPTHSFEGCRAARFSNSGNVFAALSSESSRREILLYDIQTCHLESKLTDTFATYTGRGHVYSLIHFNPSDSMLLWNGVLWDRRVSGPVHRFDQFTDYGGGGFHPAGNEVIINSEVWDLRKFRLLRSVPSLDQTSITFNARGDVMYAILRRNLEDVMSAVHTRRVKHPLFSAFRTVDAVNYSDIATIPVDRCVLDFATEPTDSFVGLITMDDQDEMYASARIYEIGRRRPTDDDSDPDDAESEEEDEDDDDDDDGDVDPLLGPGLGGDSGSDADDMSNDDDEDDSVSDLDEDEDGDFILDDVDFDGGPGILEIVTEGDEDDDDSQVLESLSSDDEDFVGNGFGY* 1940
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1128 1939 MobiDBLite consensus disorder prediction 219 234 - -
Vra5g1128 1939 MobiDBLite consensus disorder prediction 1831 1853 - -
Vra5g1128 1939 MobiDBLite consensus disorder prediction 1 25 - -
Vra5g1128 1939 MobiDBLite consensus disorder prediction 988 1013 - -
Vra5g1128 1939 Gene3D - 1508 1832 IPR015943 GO:0005515
Vra5g1128 1939 MobiDBLite consensus disorder prediction 1909 1925 - -
Vra5g1128 1939 MobiDBLite consensus disorder prediction 363 377 - -
Vra5g1128 1939 MobiDBLite consensus disorder prediction 934 955 - -
Vra5g1128 1939 PANTHER VPRBP PROTEIN-RELATED 14 254 IPR033270 GO:0016567
Vra5g1128 1939 PANTHER VPRBP PROTEIN-RELATED 1284 1818 IPR033270 GO:0016567
Vra5g1128 1939 PANTHER VPRBP PROTEIN-RELATED 322 956 IPR033270 GO:0016567
Vra5g1128 1939 PANTHER VPRBP PROTEIN-RELATED 992 1277 IPR033270 GO:0016567
Vra5g1128 1939 ProSiteProfiles LIS1 homology (LisH) motif profile. 1175 1207 IPR006594 GO:0005515
Vra5g1128 1939 MobiDBLite consensus disorder prediction 271 312 - -
Vra5g1128 1939 MobiDBLite consensus disorder prediction 219 245 - -
Vra5g1128 1939 PANTHER BNAA03G51310D PROTEIN 992 1277 - -
Vra5g1128 1939 PANTHER BNAA03G51310D PROTEIN 322 956 - -
Vra5g1128 1939 PANTHER BNAA03G51310D PROTEIN 14 254 - -
Vra5g1128 1939 PANTHER BNAA03G51310D PROTEIN 1284 1818 - -
Vra5g1128 1939 MobiDBLite consensus disorder prediction 1818 1939 - -
Vra5g1128 1939 SUPERFAMILY WD40 repeat-like 1521 1743 IPR036322 GO:0005515
Vra5g1128 1939 MobiDBLite consensus disorder prediction 332 415 - -
Vra5g1128 1939 SMART Lish 1175 1207 IPR006594 GO:0005515
Vra5g1128 1939 MobiDBLite consensus disorder prediction 332 346 - -
Vra5g1128 1939 MobiDBLite consensus disorder prediction 1287 1319 - -
Vra5g1128 1939 MobiDBLite consensus disorder prediction 1868 1896 - -
Vra5g1128 1939 MobiDBLite consensus disorder prediction 933 1014 - -
Vra5g1128 1939 SMART WD40_4 1507 1547 IPR001680 GO:0005515
Vra5g1128 1939 SMART WD40_4 1595 1633 IPR001680 GO:0005515
Vra5g1128 1939 SMART WD40_4 1550 1590 IPR001680 GO:0005515
Vra5g1128 1939 MobiDBLite consensus disorder prediction 1220 1239 - -
Vra5g1128 1939 MobiDBLite consensus disorder prediction 382 402 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g1128 1534 1740 U-box Gene Family AT2G33340 24.554 1.06e-06 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1128 K11789 - gmx:100800133 3038.44