Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1113 ATGGATGAATATTCTGGTAAAAGAGCCATTGATGGGATGGTAATCCCTAGAAAGGGGGTGAGACATGTGTTTAGAGACACTGCTAATGCTAAAGATCGAAATGGTCAGGTGTGCAGCCGCCTTACTTGCAGTAGCAGAGTCAACACTTCTAAAGGTGCTCAAATTGGTTCTTCTGAAAAAGGAAAATCTTTGAAACCTTCTATTCATTCTTCTTCTGCTGGAAAGGAAGCAGTTGGAAGCTCCTCTAGAACTTTTCCCAAGACTAGTAGCCCTGGAAAACCGCTTATAAAGCCTCGGAAAAAAGCATCATCTCAGTTAGAGACGGATTCATCTGAAACTAGTAGTGTATTGGATGAATCAGAGGTTTCACAACTCGCCCCTACCCCTGTAAAAAGTCAGACAGGGCTTCAAGCTGAAATGGAAAAGACAATGTCTGGTAATGTCATGATGGAAGTAGGAAGCTCAAGTGTGGTATCCAATTCAAGATCTCGGAGGAATTTTCATCCAAAGTCTGGAATTAGTGGTCAGGAAATTAAAAACACTGGTTCAGGGATGCGTGCTGGTACCAGTAGGTATGGATTGAGGAATCTCAAATGCAACTCTATTTCTGATGTCCTCCCTGCCGGCTGTTCATCTTCAGATTCAACCCTTAACAGAAGGAAGGACATGATAAAAAAGAGGAATTGTGAAGGGGAAGGTAGCTCGTCTGCTAGAGGGAAGAAAATGAGTGGGTCTTCAGTAGAAGGACGGAGTTCTGGTTCCAGAAATGGCATATCCATTTCTGATTCAAGAATATCTAGGAATACTCCTCCTCACAGGGACAGGTCAGACAGCAACATGGCACCAGTTAGAACTCGAAAATCAATTAGTGGTCATGCCAGGGGAAGGCTTTCTAGCCAAGGAAATGCCAATCCCGTGTCACCCAATCAGTCCCCTGTCATGATACCTTCTTTGTCTCATTCTGGTGGTCGTAATGCTTCTGGTGTATCACATCGTACTTCTGTAGATAGTTCCTTAAGTTGTCCTAGCTCTCACAGTAGGCCAGGTACTGGCAGTGAGGAGTTATATGGTGTTATGCCTGGGTCTCCTTCAGAATATGGCCTCACTCATTCTATAATGAATCTGGATAGCTTTCGACGGCGTTACAACGTGGATAGTATTGCTGAGGTATTGTTGGCACTTGAGAGGATTGAACAAGATGTTGAGCTAACACATGAGCAAATTCGTTTACTGGAATCCAACTTGTTCCTTACTGGGCTTAACTTCTACGACCCGCATAGAGACATGCGTTTGGACATAGATAACATGTCATACGAGCAACTTCTGGCTCTGGAAGAGAGGATGGGTTCTGTGAGCACAGCTCTAACAGAGGAAGCGCTATCAGAATGCCTAAAGAAAAGTTTCTTCCAGTCCTCTCCCTCTGAAAATGCAGTCAACAGTTGCAAGGAAGCCAAGGATGACACCAAATGCAGCATTTGCCAGGAGGAATATGTGGTTGCGGATGAATTGGGGAGTTTGCATTGCGAGCACATGTATCATGTGGTTTGCATACAGCAGTGGCTTCGGCTGAAGAATTGGTGCCCTATTTGCAAAGCATCTGTGGTACCGTCAAATCCATCCACATCTCAATGA 1632 0.4449 MDEYSGKRAIDGMVIPRKGVRHVFRDTANAKDRNGQVCSRLTCSSRVNTSKGAQIGSSEKGKSLKPSIHSSSAGKEAVGSSSRTFPKTSSPGKPLIKPRKKASSQLETDSSETSSVLDESEVSQLAPTPVKSQTGLQAEMEKTMSGNVMMEVGSSSVVSNSRSRRNFHPKSGISGQEIKNTGSGMRAGTSRYGLRNLKCNSISDVLPAGCSSSDSTLNRRKDMIKKRNCEGEGSSSARGKKMSGSSVEGRSSGSRNGISISDSRISRNTPPHRDRSDSNMAPVRTRKSISGHARGRLSSQGNANPVSPNQSPVMIPSLSHSGGRNASGVSHRTSVDSSLSCPSSHSRPGTGSEELYGVMPGSPSEYGLTHSIMNLDSFRRRYNVDSIAEVLLALERIEQDVELTHEQIRLLESNLFLTGLNFYDPHRDMRLDIDNMSYEQLLALEERMGSVSTALTEEALSECLKKSFFQSSPSENAVNSCKEAKDDTKCSICQEEYVVADELGSLHCEHMYHVVCIQQWLRLKNWCPICKASVVPSNPSTSQ* 544
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1113 543 SUPERFAMILY RING/U-box 483 537 - -
Vra5g1113 543 MobiDBLite consensus disorder prediction 44 136 - -
Vra5g1113 543 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 1 535 IPR045191 GO:0061630
Vra5g1113 543 Coils Coil 394 414 - -
Vra5g1113 543 MobiDBLite consensus disorder prediction 218 234 - -
Vra5g1113 543 MobiDBLite consensus disorder prediction 208 358 - -
Vra5g1113 543 MobiDBLite consensus disorder prediction 238 266 - -
Vra5g1113 543 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL44-RELATED 1 535 - -
Vra5g1113 543 MobiDBLite consensus disorder prediction 267 281 - -
Vra5g1113 543 MobiDBLite consensus disorder prediction 157 187 - -
Vra5g1113 543 Pfam Ring finger domain 489 531 IPR001841 -
Vra5g1113 543 MobiDBLite consensus disorder prediction 107 136 - -
Vra5g1113 543 SMART ring_2 490 530 IPR001841 -
Vra5g1113 543 MobiDBLite consensus disorder prediction 44 89 - -
Vra5g1113 543 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 452 537 IPR013083 -
Vra5g1113 543 MobiDBLite consensus disorder prediction 292 350 - -
Vra5g1113 543 ProSiteProfiles Zinc finger RING-type profile. 490 531 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1113 Vra-Chr5 17571500 17576173 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g1113 376 535 C3H Transcription Factor Family AT2G15530 42.236 2.11e-32 130
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1113 - - gmx:100787213 858.211
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g1490 6 29625368 29632143 Vra5g1113 5 17571500 17576173 PCT