Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1107 ATGGCGGTGGAGTTGATGAGCTTGCCGAAAATGGAGGAACAGAAGGCAATTCAAGAAGCAGCCATGGAAGGTCTAAAGGGAATGGAAAACTTCGTCCATCTTCTCTCCAACCAACCCTCTCATCTCAACACTCACCTCACCCAAGCAACCGTTTCAAACTTCAAAAAGCTCATCTCTTTGCTCAATCGAACCGGCCATGCCCGTTTCCGTCGCGCGCCTCTCCCTTCAAACAACCAATCCATTCCACCGGCCAACCCGGTCACCGTCCACCAACCTCCCACCACCTTCGCCCCCACGCACTCGCACACTCTCACTCTCGATTTCACCAAACCTAACCTCTTCTCCGCCACCAACAATTACTCCTCGGATCTCGAATTCTCAAAAGAAACCTTCAGCGTCTCCTCCAACTCCTCCTTCATCTCCTCCGCCATCACCGCCGATGGCAGCGTCTCCAACGGCAACCAAGCCTCCTCTCTCTTCCTCACCTCGCCTCCGCCGCCTTCTTCCTCCGGAAAACCGCCACTCGTCAAGAAGCGGTGCCACGACCACTCCGACGACTTCTCCGGCTCCACCAAGTGCCACTGCATCAAGAGAAGGAAGAATCGGGTGAAGAAGACGGTGAGAGTGCCGGCGATTAGTACGAAAATCGCCGATATTCCGTCGGACGAGTACTCCTGGAGGAAGTACGGGCAGAAGCCGATCAAGGGATCACCGTACCCGAGGGGTTACTATAAGTGCAGTACGGTGAGAGGATGTCCGGCGAGGAAACACGTGGAACGTGCTTCGGATGATCCGACGATGTTGATTGTGACGTACGAGGGGGAGCACCGTCACTCCATTCAGACCGCGTTGCAGGATAACATTTCCGGCGCCGTGGGTTTGGTTTTTTAG 891 0.5499 MAVELMSLPKMEEQKAIQEAAMEGLKGMENFVHLLSNQPSHLNTHLTQATVSNFKKLISLLNRTGHARFRRAPLPSNNQSIPPANPVTVHQPPTTFAPTHSHTLTLDFTKPNLFSATNNYSSDLEFSKETFSVSSNSSFISSAITADGSVSNGNQASSLFLTSPPPPSSSGKPPLVKKRCHDHSDDFSGSTKCHCIKRRKNRVKKTVRVPAISTKIADIPSDEYSWRKYGQKPIKGSPYPRGYYKCSTVRGCPARKHVERASDDPTMLIVTYEGEHRHSIQTALQDNISGAVGLVF* 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1107 296 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 10 281 IPR044810 GO:0003700
Vra5g1107 296 SMART WRKY_cls 220 280 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vra5g1107 296 Gene3D WRKY domain 207 280 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vra5g1107 296 MobiDBLite consensus disorder prediction 155 183 - -
Vra5g1107 296 PANTHER WRKY PROTEIN 10 281 - -
Vra5g1107 296 Pfam WRKY DNA -binding domain 222 278 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vra5g1107 296 ProSiteProfiles WRKY domain profile. 215 281 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vra5g1107 296 Pfam Plant zinc cluster domain 177 218 IPR018872 -
Vra5g1107 296 SUPERFAMILY WRKY DNA-binding domain 218 280 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1107 Vra-Chr5 17522135 17523796 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g1107 1 296 WRKY Transcription Factor Family AT2G24570 59.752 9.62e-113 327
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vra5g1107 WRKY 4e-26 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1107 - - vun:114196171 543.117