Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1102 ATGCAACAGAGGCTGAAGTTGCAGCAACAACAAGCCCTCATGCAGCAAGCCTTGCTTCAGCAGCAGCAGATGTACCACCCTGGCATGCTCGCCGCTGCCATGTCTCAGATGGAGCCTGTTCCAAGTGGAAATTTGCCTCCTGGTTTTGATACTTCTGCATGCCGTAGCGTTTATGTAGGAAATATTCATGTAAATGTCACTGATAAACTTCTCGCAGAAGTTTTTCAGAGTGCTGGTCCTCTTGCTGGCTGCAAGCTCATAAGAAAAGAAAAGTCCTCTTATGGTTTTGTGGACTACCATGATCGAGCATCTGCAGCCCTTGCAATAATGACATTGCACGGACGACAACTATATGGTCAAGCACTTAAGGTGAATTGGGCATATGCAAATAGCAGTAGGGAGGACACATCAGGGCACTTCAATATATTTGTCGGTGATTTGAGTCCAGAGGTTACTGATGCAACTTTATTTGCTTGCTTCTCAGTCTATCCTAGTTGTTCTGATGCAAGGGTTATGTGGGATCACAAAACTGGTCGGTCAAAAGGATATGGTTTTGTTTCTTTCCGTGATCATCAGGATGCCCAAAGTGCCATAAATGATATGACAGGCAAGTGGCTGGGAAATAGGCAAATACGATGCAACTGGGCAACTAAGGGTGCTGGTACCAGCTCCAATGAAGAGAAGAGCAATGAAAACCAAAATGCTGTGGTGCTTACAAATGGATCTTCAGATGGTGGTCAAGATAATAATAATAACGAAGATGCTCCCGAAAACAATTCTTTATACACCACAGTTTATGTTGGCAACCTTCCTCATGATGTAACACAAGCTGAACTCCATTGCCAATTCCATGCACTGGGGGCTGGGGTAATTGAGGAGGTTCGAGTTCAAAGGGATAAGGGTTTTGGATTTGTTAGATACAACACTCACGAGGAAGCTGCGTTGGCCATTCAAGTGGCTAATGGAAGAATAATCCGTGGGAAGAGTATGAAGTGTTCGTGGGGTAGTAAACCAACTCCTCCTGGAACAGCTTCGAATCCACTACCGCCTCCTGCTCAACCATATCAAATACTTCCGACTGCAGGGATGAACCAAGGTTATTCTCCTGCTGAGTTGTTGGCTTATCAGCGCCAACTGGCCTTGAGTCAGGCTGCTGTATCTGGTCTTTCAGGTCAAGCTCTTCTACAAATGACCGGACAACACGGCCTAGCTCCTGCTTCAATGGGCGTAAACTCTGGGGGATCTCAAGCCATGTATGATGGATATACGGGTAATTCATCAAGGCAGCAGCTTATGTACTATCGTTGA 1308 0.4572 MQQRLKLQQQQALMQQALLQQQQMYHPGMLAAAMSQMEPVPSGNLPPGFDTSACRSVYVGNIHVNVTDKLLAEVFQSAGPLAGCKLIRKEKSSYGFVDYHDRASAALAIMTLHGRQLYGQALKVNWAYANSSREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDHKTGRSKGYGFVSFRDHQDAQSAINDMTGKWLGNRQIRCNWATKGAGTSSNEEKSNENQNAVVLTNGSSDGGQDNNNNEDAPENNSLYTTVYVGNLPHDVTQAELHCQFHALGAGVIEEVRVQRDKGFGFVRYNTHEEAALAIQVANGRIIRGKSMKCSWGSKPTPPGTASNPLPPPAQPYQILPTAGMNQGYSPAELLAYQRQLALSQAAVSGLSGQALLQMTGQHGLAPASMGVNSGGSQAMYDGYTGNSSRQQLMYYR* 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1102 435 Gene3D - 139 239 IPR012677 -
Vra5g1102 435 SUPERFAMILY RNA-binding domain, RBD 255 346 IPR035979 GO:0003676
Vra5g1102 435 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 57 123 IPR000504 GO:0003723
Vra5g1102 435 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 265 330 IPR000504 GO:0003723
Vra5g1102 435 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 142 212 IPR000504 GO:0003723
Vra5g1102 435 CDD RRM2_PUB1 141 215 - -
Vra5g1102 435 SUPERFAMILY RNA-binding domain, RBD 134 244 IPR035979 GO:0003676
Vra5g1102 435 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 140 218 IPR000504 GO:0003723
Vra5g1102 435 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 263 337 IPR000504 GO:0003723
Vra5g1102 435 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 55 129 IPR000504 GO:0003723
Vra5g1102 435 Gene3D - 1 138 IPR012677 -
Vra5g1102 435 PANTHER OLIGOURIDYLATE-BINDING PROTEIN 1B-LIKE ISOFORM X1 4 432 - -
Vra5g1102 435 CDD RRM3_TIA1_like 263 337 - -
Vra5g1102 435 Gene3D - 240 341 IPR012677 -
Vra5g1102 435 SUPERFAMILY RNA-binding domain, RBD 40 133 IPR035979 GO:0003676
Vra5g1102 435 MobiDBLite consensus disorder prediction 237 259 - -
Vra5g1102 435 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 4 432 - -
Vra5g1102 435 SMART rrm1_1 264 333 IPR000504 GO:0003723
Vra5g1102 435 SMART rrm1_1 56 125 IPR000504 GO:0003723
Vra5g1102 435 SMART rrm1_1 141 214 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1102 Vra-Chr5 17476906 17484010 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g1102 47 337 Eukaryotic Initiation Factors Gene Family AT4G34110 26.490 3.96e-22 97.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1102 K13201 - gmx:100777108 821.617
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g1102 5 17476906 17484010 Vra5g1102 5 17476906 17484010 ECH