Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1101 ATGTGGTTGCCAAAGCATCGGTCAGATAAAAAGGATGGTGTGAGTGGATTAGTAGCAGTGGCAATTGATAAAAAGAAAGAGAGCCAATCTGCACTCAAATGGGCAGTTGACAATCTCCTCACCAGAAGTGCAACAGTAATTCTCATCCATGTCAAGCTTCTCGCACCAACCCTGTCTCCATCACCTTCTCTTTTCGCCCCTAGGATAAGTTCTTTCCTGGGTGATGATACTTCAGTGGTAAGCAAAGAACACGAAGGCCAAAACAGAAGTGTTTTCCTCCCATATCGTGTCTTCTGTACAAGGAAAGATATTCAATGCAAGGATGTCCTACTAGAAGATTCAGAAGTACCCAGAGCTATAATTGAATATGCTTCTCAGACAGGAGTTGAGCATCTGGTTCTTGGCTCTTCAGCAAAAACTAGTTTTCTCAAAAGATTCAAGGTGTCAGATATTCCAGGAGAAATTGCAAAAGGGGCGCCAGATTTCTGTACTGTCTATGTTATTGCCAAAGGAAAGATTCAAACTATGCGATCTGCTACTCGTCCTGCACCTGCCATTTTCTCTAACCAGCTCTGTCAAGTTAACAATGGCAGGTCAAACCTTTCAGAGCCAAATGTGTACTCAGCTCGAAGCATAAGAGAACAAGAAACGTATTCCTTTGATGCTGGATCACAGTATGATGAAACATTCAGGTCACCATTTACTAGGAAACGTTACAATGGCAGACAATATGGGGACACTCCCAATTTAGATACGGACATATCCTTTGTAAGCTCTGGAAGGAGAAGCACAGAACGTTTGATCCCTTCATTGAACTTAGATACAGGAATCTCCAACAGTCGGCTATCATATAGCTCAGACACAGATGCAAACTTCAGCTTTGAGTCAGCGTCTTATCGAAGGAAGTCTACGGAAATGGGCTCTCCTCTTGAATTATCATCATTCTCATTTGAGAGTGATAAGCAATCATCTTGTTCGTCACAAACAGCGGATGAATTGGAAGCTGAAATGAGGAGATTGAAGTTGGAGCTGAAGCAGACCATGAAAATGTATAACACGGCTTGTAAAGAAGCACTCACAGCACAACAGAAGGCAGTGGAACTTCAGCGGTGGAAAATAGAGGAAGAGAGGAGATTGGAAGAAGCAAGGCTGGCTGAGGAAGCAGCACTGGCAATTGCAGAAAAGGAGAAAGCCAAGTCTAAAGCAGCCATTGAGGCTGCTGAAGCACAAAAAAGGATTGCAGAACTGGAGGCACAGAAGAGACTCAGTGCAGAAATGAAAGCACTTAAAGAATCAGAGGAGAAAAGAAAAGTTCTTGAATCTTTGGTAAATGTAGATGTCAGGTATAGAAAATACACTATTGAGGAGATTGAAGAAGCAACAAATTTTTTTTCTGAATCCCTTAAAATTGGAGAAGGAGGATATGGTCCTGTTTTCAAGTGCCTTTTGGATCACACCCCTGTTGCAGTCAAGGTTCTACGCCCTGATGCACAACAAGGAAGATCACAGTTTCAGCGAGAGGTTGAGGTATTGAGCTGCATACGGCATCCACACATGGTTCTACTCCTAGGAGCATGTCCAGAATATGGATGTCTAGTGTATGAGTATATGGCAAATGGCAGCTTGGAAGATCGCCTCTTTCGACAAGGCAACACTCCCCCACTTCCTTGGCAGCTCAGATTCAAGATAGCAGCTGAGATCGGCACAGGCTTGCTGTTCCTGCACCAGACAAAACCAGAACCTCTGGTGCACAGGGACTTGAAACCAGCCAACATCTTGCTTGACAGAAATTTTGTGTCGAAAATCAGTGATGTAGGTTTGGCCAGGCTAGTTCCACCATCTGTGGCAGACTCTGTCACGCAGTATCACATGACATCCACAGCCGGAACCTTCTGCTACATAGATCCTGAGTACCAGCAGACAGGAATGTTGGGAGTGAAATCAGACATATACTCCCTTGGGATAATCTTTTTACAAATTTTGACAGCAAAATCACCTATGGGTTTGACCCATCATGTTGCAAGGGCCATTGAGAAGGGAACTTTATCTGAGATGTTGGATCCATCACTCTCTGATTGGCCACAAGAGGAGGCCTTGAATTTCGCTAAGTTGGGAGTGCAGTGTGCTGAATTAAGGCGCAGAGACAGACCTGATCTTGGCAAGGTTGTCCTACCAGAACTCAACAGACTCAGAAACCTTGGTGAAGATACTGACCTTATTTCAGCTTTGGGTAATCCTACCAATATGCCCCGAGACAGACATGTTTCAGCTGTACTTGAAGGAGATTGTCCTCCATTTCCTAACGCAGTCTCAGGGGAAATTAGAGCTAACAATTCAGTGACTTTCTGA 2349 0.4406 MWLPKHRSDKKDGVSGLVAVAIDKKKESQSALKWAVDNLLTRSATVILIHVKLLAPTLSPSPSLFAPRISSFLGDDTSVVSKEHEGQNRSVFLPYRVFCTRKDIQCKDVLLEDSEVPRAIIEYASQTGVEHLVLGSSAKTSFLKRFKVSDIPGEIAKGAPDFCTVYVIAKGKIQTMRSATRPAPAIFSNQLCQVNNGRSNLSEPNVYSARSIREQETYSFDAGSQYDETFRSPFTRKRYNGRQYGDTPNLDTDISFVSSGRRSTERLIPSLNLDTGISNSRLSYSSDTDANFSFESASYRRKSTEMGSPLELSSFSFESDKQSSCSSQTADELEAEMRRLKLELKQTMKMYNTACKEALTAQQKAVELQRWKIEEERRLEEARLAEEAALAIAEKEKAKSKAAIEAAEAQKRIAELEAQKRLSAEMKALKESEEKRKVLESLVNVDVRYRKYTIEEIEEATNFFSESLKIGEGGYGPVFKCLLDHTPVAVKVLRPDAQQGRSQFQREVEVLSCIRHPHMVLLLGACPEYGCLVYEYMANGSLEDRLFRQGNTPPLPWQLRFKIAAEIGTGLLFLHQTKPEPLVHRDLKPANILLDRNFVSKISDVGLARLVPPSVADSVTQYHMTSTAGTFCYIDPEYQQTGMLGVKSDIYSLGIIFLQILTAKSPMGLTHHVARAIEKGTLSEMLDPSLSDWPQEEALNFAKLGVQCAELRRRDRPDLGKVVLPELNRLRNLGEDTDLISALGNPTNMPRDRHVSAVLEGDCPPFPNAVSGEIRANNSVTF* 783
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1101 782 CDD STK_N 17 171 - -
Vra5g1101 782 Gene3D Phosphorylase Kinase; domain 1 443 536 - -
Vra5g1101 782 Coils Coil 323 350 - -
Vra5g1101 782 SUPERFAMILY Protein kinase-like (PK-like) 447 723 IPR011009 -
Vra5g1101 782 Gene3D Transferase(Phosphotransferase) domain 1 537 740 - -
Vra5g1101 782 SMART serkin_6 464 727 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra5g1101 782 PANTHER OS02G0152300 PROTEIN 5 780 - -
Vra5g1101 782 ProSiteProfiles Protein kinase domain profile. 464 727 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra5g1101 782 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 18 160 - -
Vra5g1101 782 Pfam Protein kinase domain 466 717 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra5g1101 782 ProSitePatterns Serine/Threonine protein kinases active-site signature. 582 594 IPR008271 GO:0004672|GO:0006468
Vra5g1101 782 Coils Coil 376 436 - -
Vra5g1101 782 Pfam Universal stress protein family 18 145 IPR006016 -
Vra5g1101 782 PANTHER UNIVERSAL STRESS FAMILY PROTEIN 5 780 - -
Vra5g1101 782 Gene3D HUPs 17 168 IPR014729 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1101 Vra-Chr5 17469903 17475495 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g1101 1 756 Receptor kinase-like Gene Family AT1G78940 56.371 0.0 801
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Vra5g1101 Pkinase 3.2e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1101 - - gmx:100803867 1128.62
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g1101 5 17469903 17475495 Vra5g1101 5 17469903 17475495 ECH