Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1098 ATGGCGCATATGGTAGAGTACTTCTGTCTTCTCATGCTCTTCACTTGTTTTTTGCCTTCACTCGCTGACAATGCTCAAGTTCTGATGAACTTCAAAACATTCTTGTCCAATGCTCATGCTTTAAGCAACTGGGGGAACCAATCAATCGGTGTGTGCAGCTGGACTGGTGTACTGTGTTTCAATCAGAGTTTTCATGGCTTGAGATTAGAACACATGGGACTGGGTGGCACTGTTGACGTAGACACGCTGCATCTGTTGTCCAATTTGAACAGCTTTAGTGTCATTAACAACAACTTCGAGGGTCCAATGCCCGAATTCAAGAAGCTTGTCAATTTAAGGGCGTTGTTTCTGAGCAATAACAAGTTCTCTGGTGAAATCCCAGATGATGCTTTTGATGGCATGAAACGTCTCAAGAGAGTATTCTTGGCTGAAAATGAGTTCACTGGTCATATTCCTACGTCCTTGGCTCAATTGCCTAAACTTTTTGATGTGGACATACATGGAAATAGTTTTGAAGGAAACATACCAGAATTTCAACAGACCGATTTCAGAGTGTTTAATCTGTCTTACAACAACTTAGAGGGTCGAATACCAGAAAGCCTAAGCAGCAAGGATCCAACTTCATTTGCTGGTAATCAAGGTCTATGTGGAGATCCTCTAGGCCCCTGCATTGAAAGCCCCACCACACCATCGGACACTGATCAACCACCAAATTCACATACAGAAAAAGAAAACAAGAAAAAACGCATTATTCTAACAGTTGTTGTAGTGGTGGGGGTGATTGTGCTGGCTTTAATAATAGCACTCTTAATCATACGTTACCGTCGAAAGAAACCCGTGCTGGTCAAAGATGCACAACCCCAGAACGTTACTCCATTTTCTAGCGAGTCCAAATCCATTGTTGTGACAGCTGAATCCAAGAAAAGTGAAGACGGAGGGTTGAACTTTGTCGGGAACCAGAGAGGGGGGATTGACTTGCAAGACCTTCTAAGGGCCTCGGCAGAGGTTCTGGGGAGTGGTAGCTTTGGATCCACTTACAAGGCCATGCTTCTGAACGGGCCAGTGGTGGTGGTGAAGAGATTCAAGCACATGAACGACGTGGGGAAGAAAGAGTTTTTTGACCACATGAACAGGCTCGGAAAATTGTCACATCCCAATCTACTCCCTCTCGTTGCATTCTACTACGGAAAAGAAGAGAAGCTTTTGGTTCATGACTTTGCTGAAAATGGCAGCTTGGCCAGTCATCTTCACGGAAGAAGCGGTGTTGAGTTGAACTGGGCAACTCGTTTGAAGATCATAAAAGGAGTGGCGAGGGGATTGGCTTATCTGTACACGGAGTTCCCCGACCAAGCATTACCGCACGGTCATCTGAAATCATCAAACGTTGTACTAGACAGTTCCTTCGAGGCTCGTTTGGCAGAGTACGGACTGGTGGCGGTGGTGGAGAAGAGCCACGCTCAGCAGTTCATGGTGGCTTACAAGTCTCCAGAGGCGAGCCAGTCTGAGAAGCCAAGCGAGAAGAGCGATGTGTGGTGTCTGGGGATTCTGATACTGGAGCTTTTGACGGGGAAGTTCCCTGCGAGTTATCTGAGGCATGGGAAGGGAGCGAGTGAGGATTTGGCGGCGTGGGTGAACTCCATAGTGAGCGAAGGGTGGAATGGGGAGATGCTTGATAAGGAGATTCCTGGGAGAGGGAGTGGAGAGGGTGAGATGGTGAAGCTGTTAAGGATTGGAATGGGATGCTGTGAATGGAGCTTGGAGAGTAGGTGGAGTTGGAAGGAAGCTGTGGCTAAGATTGAGGAGTTGAAGGAGAGTGACGATGGTGATGACGGTGGAAGTGAACGGAATCATCTCTACTCGGTTTCTACCAGTCTCGACGACTTCTCTCTCTCACAGTCTATTTCATGA 1908 0.4701 MAHMVEYFCLLMLFTCFLPSLADNAQVLMNFKTFLSNAHALSNWGNQSIGVCSWTGVLCFNQSFHGLRLEHMGLGGTVDVDTLHLLSNLNSFSVINNNFEGPMPEFKKLVNLRALFLSNNKFSGEIPDDAFDGMKRLKRVFLAENEFTGHIPTSLAQLPKLFDVDIHGNSFEGNIPEFQQTDFRVFNLSYNNLEGRIPESLSSKDPTSFAGNQGLCGDPLGPCIESPTTPSDTDQPPNSHTEKENKKKRIILTVVVVVGVIVLALIIALLIIRYRRKKPVLVKDAQPQNVTPFSSESKSIVVTAESKKSEDGGLNFVGNQRGGIDLQDLLRASAEVLGSGSFGSTYKAMLLNGPVVVVKRFKHMNDVGKKEFFDHMNRLGKLSHPNLLPLVAFYYGKEEKLLVHDFAENGSLASHLHGRSGVELNWATRLKIIKGVARGLAYLYTEFPDQALPHGHLKSSNVVLDSSFEARLAEYGLVAVVEKSHAQQFMVAYKSPEASQSEKPSEKSDVWCLGILILELLTGKFPASYLRHGKGASEDLAAWVNSIVSEGWNGEMLDKEIPGRGSGEGEMVKLLRIGMGCCEWSLESRWSWKEAVAKIEELKESDDGDDGGSERNHLYSVSTSLDDFSLSQSIS* 636
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1098 635 Pfam Leucine rich repeat 111 170 IPR001611 GO:0005515
Vra5g1098 635 ProSiteProfiles Protein kinase domain profile. 331 602 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra5g1098 635 Pfam Protein kinase domain 334 596 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra5g1098 635 Gene3D Phosphorylase Kinase; domain 1 298 406 - -
Vra5g1098 635 Gene3D Ribonuclease Inhibitor 182 227 IPR032675 -
Vra5g1098 635 Gene3D Transferase(Phosphotransferase) domain 1 407 620 - -
Vra5g1098 635 Gene3D Ribonuclease Inhibitor 23 181 IPR032675 -
Vra5g1098 635 ProSitePatterns Protein kinases ATP-binding region signature. 337 359 IPR017441 GO:0005524
Vra5g1098 635 Pfam Leucine rich repeat N-terminal domain 23 59 IPR013210 -
Vra5g1098 635 SUPERFAMILY L domain-like 25 204 - -
Vra5g1098 635 MobiDBLite consensus disorder prediction 220 244 - -
Vra5g1098 635 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 4 611 - -
Vra5g1098 635 SUPERFAMILY Protein kinase-like (PK-like) 335 601 IPR011009 -
Vra5g1098 635 PANTHER LRR RECEPTOR-LIKE KINASE 4 611 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1098 Vra-Chr5 17454110 17456956 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g1098 4 610 Receptor kinase-like Gene Family AT5G35390 45.095 5.85e-180 524
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Vra5g1098 Pkinase 5.1e-30 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1098 - - gmx:100803999 958.747
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g1098 5 17454110 17456956 Vra5g1098 5 17454110 17456956 ECH