Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1088 ATGCGCATTGAGTTTCTATTTATACCCCTGAAGCTGCTACTCTCATTCCCTTTTCCCTCCCAATTCTCTCTCCTACTGTTAACGCTCTCTCTCTCCGGTCACGTTCTGGCTGCGTCTCAAGAATCTCTCACGCCGTCGTCGGTTTTCTCCGGCCACGGCTGCTTCGAACGGATGACGACCACGGAGTCTGATCTCGATAACGACTTTTCTAATCTCGACGAGCTCCGGTATCTGAACCTCGCCGGAACCGATGTCTTCGCCGCTTTCCAAAACCTATTACCGGATGCTATGACTTCATTTTCAACTTGTGGGCTGACAGACCCTTTTTCTTCCCAAAACCTCACTCCCAAGCATTCCACCATCACTGCTACAATCGATTCTCGGTCTTCCATTTGTGGCACTGCTAATGTTGGTAGTCCAGTGTCAGCTAATAAACCAGAGGGCTGGAAGACTCATACGAAAGGAGCCACAAGTGGTTCCTCTGAGCCATCTGATGAAGATGGTCCTTGTGAACAGAGCACAAATGCAGTTGAATTGAAACGTCTTAGAAGGAAGGTTTCTAATCGCAATTCTGCCAGAAGGTCAAGAAGAAGAAAACAAGCGCAGTTGGCTGACCTAGAGTTGCAGGTTGAAAAACTGAAAGTGGAAAACGCAACCCTATACAAGCAGTTCAATGATGCTAGTCAACATTTTCGTGAGGCTGACACGAATAACCGGGTGCTGAAATCAGACGTAGAAGCTTTGAGAGCTAAGGTGAAGTTAGCAGAGGACATGGTGACTAGAGGCTCTTTCACTACGTTAAACAATCAGCTTCTTCCCACACAGTGTCAAGTGAACACACCCCCGCCACTGAACACGACCAATCTCCGCCGCATGGCGCATGTTTCGCCAACCATCACTGTGCATGGAAATGATGGCTCATACAACGATGCCACGGTTTGTGTACAGAATTCAGACCTTGGAAACTTGGACATGAATTTCAACGACATGAACAATGTGAACGGAGTTATGAGCGATGGCATGAGTTGTGGGAGTATTTGGCCACCTTTTTAG 1053 0.4767 MRIEFLFIPLKLLLSFPFPSQFSLLLLTLSLSGHVLAASQESLTPSSVFSGHGCFERMTTTESDLDNDFSNLDELRYLNLAGTDVFAAFQNLLPDAMTSFSTCGLTDPFSSQNLTPKHSTITATIDSRSSICGTANVGSPVSANKPEGWKTHTKGATSGSSEPSDEDGPCEQSTNAVELKRLRRKVSNRNSARRSRRRKQAQLADLELQVEKLKVENATLYKQFNDASQHFREADTNNRVLKSDVEALRAKVKLAEDMVTRGSFTTLNNQLLPTQCQVNTPPPLNTTNLRRMAHVSPTITVHGNDGSYNDATVCVQNSDLGNLDMNFNDMNNVNGVMSDGMSCGSIWPPF* 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1088 350 Coils Coil 238 258 - -
Vra5g1088 350 Gene3D - 179 235 - -
Vra5g1088 350 MobiDBLite consensus disorder prediction 151 171 - -
Vra5g1088 350 PANTHER BASIC LEUCINE ZIPPER 63 58 349 - -
Vra5g1088 350 Coils Coil 189 223 - -
Vra5g1088 350 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 178 241 IPR004827 GO:0003700|GO:0006355
Vra5g1088 350 MobiDBLite consensus disorder prediction 136 175 - -
Vra5g1088 350 Pfam bZIP transcription factor 178 228 IPR004827 GO:0003700|GO:0006355
Vra5g1088 350 PANTHER BZIP TRANSCRIPTION FACTOR 58 349 - -
Vra5g1088 350 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 183 198 IPR004827 GO:0003700|GO:0006355
Vra5g1088 350 SUPERFAMILY Leucine zipper domain 180 229 IPR046347 GO:0003700|GO:0006355
Vra5g1088 350 CDD bZIP_plant_GBF1 197 232 IPR045314 GO:0003700|GO:0006355
Vra5g1088 350 SMART brlzneu 176 240 IPR004827 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1088 Vra-Chr5 17387640 17392584 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g1088 126 348 bZIP Transcription Factor Family AT5G24800 48.261 6.43e-55 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Vra5g1088 bZIP_1 1.2e-11 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1088 K25784 - gmx:778131 421.394
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g1088 5 17387640 17392584 Vra5g1088 5 17387640 17392584 ECH