Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1085 ATGCAAAAGGAAAAGGAAGCCATTATCAAGGAGGGAACGGATATAGAAATGGAAGGAACTCATGCAAAAGAGGAAACCCTACCACCAGGATTTCGATTTCATCCTACCGATGAAGAACTTGTCACTTGCTATCTCCTAAATAAGATCTCGGATTCTAATTTCACAGGCAGAGCAATAACTGATGTGGATCTCAACAAAAGTGAGCCATGGGAGCTTCCAGGGAAAGCTAAGATGGGTGAAAAAGAATGGTACTTCTTCAGTCTGAGAGACCGTAAATACCCGACTGGTGTGAGAACCAATCGAGCAACAAACACAGGGTATTGGAAGACAACAGGGAAAGACAAGGAGATCCTCAACAGTGGGACATCAGAATTGATTGGCATGAAGAAGACTTTAGTTTTCTACAAAGGAAGAGCTCCAAGAGGAGAGAAAAGCAACTGGGTCATGCATGAATACCGCATTCACTCAAAGTCCAGTTTCAGAACAACTAGGCAAGATGAGTGGGTGGTTTGCAGGGTATTCAAGAAGAGTGGTGGTGCAAAAAAGTTCCCTTCTTCCAACCATGCAAGAGCAGTGAATCCTTACAGCTTAGAAATAGGGCCAAATATTATGCAGCCACCAGTGATGCAATTGGGAGATCCTGCTGCTCATTTCCTTTATGGAAGGAACTACATGAACAGTGTTGAGTTAGGTGAACTTGCTAGGGTTTTAAGAGGGGGTGGATCAACAAGTAGTGTCAATCAACCAATGCAATCCCAATTGGGGTACCCAACATCAGCAGGATTCACCATTTCAGGACTGAATTTGAATCTGGGAGGAGGAGGAGGAGGAGCAACAACCACAACACAACCCATTTTTCGACCAATGCAAGCTTCTTCTGCTCCTGTTCATACAATGGCTCAAGTTCTTGATGTAAATTCCAGCATGATGACAACCGGTTCTCTTGTTGCAGATGTAGGTTATGGATCAGAAATGAGTAATAACATGAATTCTCAAGGGAATAGATTCATGGGTATGGACCATTGCATGGATCTAGACACCTACTGGCCTTCCTACTAA 1059 0.4353 MQKEKEAIIKEGTDIEMEGTHAKEETLPPGFRFHPTDEELVTCYLLNKISDSNFTGRAITDVDLNKSEPWELPGKAKMGEKEWYFFSLRDRKYPTGVRTNRATNTGYWKTTGKDKEILNSGTSELIGMKKTLVFYKGRAPRGEKSNWVMHEYRIHSKSSFRTTRQDEWVVCRVFKKSGGAKKFPSSNHARAVNPYSLEIGPNIMQPPVMQLGDPAAHFLYGRNYMNSVELGELARVLRGGGSTSSVNQPMQSQLGYPTSAGFTISGLNLNLGGGGGGATTTTQPIFRPMQASSAPVHTMAQVLDVNSSMMTTGSLVADVGYGSEMSNNMNSQGNRFMGMDHCMDLDTYWPSY* 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1085 352 ProSiteProfiles NAC domain profile. 27 176 IPR003441 GO:0003677|GO:0006355
Vra5g1085 352 PANTHER NAC TRANSCRIPTION FACTOR-LIKE PROTEIN 12 349 - -
Vra5g1085 352 Pfam No apical meristem (NAM) protein 28 154 IPR003441 GO:0003677|GO:0006355
Vra5g1085 352 Gene3D NAC domain 36 179 IPR036093 GO:0003677|GO:0006355
Vra5g1085 352 SUPERFAMILY NAC domain 20 176 IPR036093 GO:0003677|GO:0006355
Vra5g1085 352 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 12 349 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1085 Vra-Chr5 17359257 17361497 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g1085 23 352 NAC Transcription Factor Family AT2G24430 54.335 3.74e-114 332
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vra5g1085 NAM 4.9e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1085 - - gmx:100804931 604.749
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g1085 5 17359257 17361497 Vra5g1085 5 17359257 17361497 ECH