Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1081 ATGGAAAGGGAACGTACACGGAAACGCCCTCGTCTCGCATGGGACGTAGCCCCTCCCACAGTGCTCGAGCCTCAACTGGCTCTGCCGGTACCTGGTGACGAAGGAATTGAAAGGAAGCACGCTTCACCTCCAAGAAGGGACGACGATCGCGAAGGACATTATGTCTTCAATCTTGGCGAAAATCTCACTCCTAGATATAAAATCCTCGGCAAGATGGGTGAAGGCACATTTGGTCGGGTATTGGAATGTTGGGACCGCGTAACTAGAGAATATGTGGCTGTCAAGGTAGTTAGAAGCATACGGAAATATCGAGATGCAGCCATGCTCGAGGTTGATGTGCTTCAACATCTAGCAAAGAACGATAGAGGAAACTCACGATGTGTGCAGATCCGAAATTGGTTTGATTACCGAAATCACATATGCATTGTCTTTGAGAAGCTTGGACCAAGCTTATTTGATTTTCTAAAGAGAAATAAATACTGCCCATTCCCTGTGGATCTTGTTCGGGAATTTGGACGACAGCTTTTGGAATCTGTAGCATATATGCATGAACTACGCCTAATCCACACTGATCTGAAGCCAGAAAATATTCTTCTGGTTTCTTCTGAGTATGTAAAGCTCCCTAGCTATAAGAGAGTTTCCTCAGATGAAACGCAGTTCAGGTGCTTGCCCAAGTCTAGTGCTATTAAGCTGATTGATTTTGGTAGTACTGCATATGATAATCAGAATCATAGCTCCATTGTTTCTACAAGGCATTACAGAGCCCCTGAGATTATTCTAGGTCTAGGGTGGTCATATCCATGTGATCTGTGGAGTGTCGGATGTATTCTTATTGAACTATGCACGGGTGAGGCGTTGTTTCAGACTCATGAAAACTTGGAGCACCTGGCAATGATGGAAAGAGTTTTGGGACCTATTCCAGAGCCCATGATTCGAAGGTCCAATAAGGGCGCAGAAAAGTATTTCAAGCGTGGATCAAGACTAAGATGGCCTGAAGGAGCTATTTCTAGGGAGAGCATCAATGCAGTAAAGAAGCTTGGTCATCTGAAGGATATTATATCTCGAAGTGTGGACTCTTCAAGGTCCTCTTTAACTGACTTGTTACATGGGTTATTGTCTTATGACCCAACCAAACGGTTAACCGCTCTTCAAGCGCTCGATCATCCCTTCTTTAGGAATCCAACCTAA 1188 0.4461 MERERTRKRPRLAWDVAPPTVLEPQLALPVPGDEGIERKHASPPRRDDDREGHYVFNLGENLTPRYKILGKMGEGTFGRVLECWDRVTREYVAVKVVRSIRKYRDAAMLEVDVLQHLAKNDRGNSRCVQIRNWFDYRNHICIVFEKLGPSLFDFLKRNKYCPFPVDLVREFGRQLLESVAYMHELRLIHTDLKPENILLVSSEYVKLPSYKRVSSDETQFRCLPKSSAIKLIDFGSTAYDNQNHSSIVSTRHYRAPEIILGLGWSYPCDLWSVGCILIELCTGEALFQTHENLEHLAMMERVLGPIPEPMIRRSNKGAEKYFKRGSRLRWPEGAISRESINAVKKLGHLKDIISRSVDSSRSSLTDLLHGLLSYDPTKRLTALQALDHPFFRNPT* 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1081 395 PANTHER BNAA07G37640D PROTEIN 5 392 - -
Vra5g1081 395 PANTHER SERINE/THREONINE-PROTEIN KINASE DOA-RELATED 5 392 - -
Vra5g1081 395 Gene3D Phosphorylase Kinase; domain 1 53 146 - -
Vra5g1081 395 SMART serkin_6 66 391 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra5g1081 395 Gene3D Transferase(Phosphotransferase) domain 1 120 391 - -
Vra5g1081 395 ProSitePatterns Serine/Threonine protein kinases active-site signature. 187 199 IPR008271 GO:0004672|GO:0006468
Vra5g1081 395 MobiDBLite consensus disorder prediction 25 51 - -
Vra5g1081 395 CDD PKc_CLK 53 391 - -
Vra5g1081 395 ProSiteProfiles Protein kinase domain profile. 66 391 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra5g1081 395 MobiDBLite consensus disorder prediction 33 51 - -
Vra5g1081 395 Pfam Protein kinase domain 66 391 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra5g1081 395 SUPERFAMILY Protein kinase-like (PK-like) 53 393 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1081 Vra-Chr5 17341654 17345299 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g1081 65 393 Core Cell Cycle Gene Families AT3G48750 25.893 1.39e-26 106
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CLK Vra5g1081 Pkinase 3.4e-51 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1081 K08287 - gmx:100782453 749.584
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g1081 5 17341654 17345299 Vra5g1081 5 17341654 17345299 ECH