Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1060 ATGGAACGTGAGAGGACAATCCCTGCTGTAGATGGGGTGACAGATGGCGTTCAGAAAATTAGAGCTCTGCACGGGAGGACTACTGGCCCAACCAGGCGCTCTACAAAAGGACAATGGACACCTGAAGAGGACGAGACTTTGCGGAAGGCTGTCCAGCGTTTTAAAGGAAAGAACTGGAAAAAAATAGCGGAGTGTTTCAAGGATAGAACTGATGTACAATGCTTGCATAGGTGGCAGAAAGTCTTAAATCCTGAACTTGTCAAAGGTCCATGGTCTAAGGAGGAGGATGAAATCATTATTGATTTGGTGAATCGATATGGGCCCAAGAAGTGGTCTACTATCGCACAGAAGTTACCTGGACGCATTGGTAAGCAATGTCGAGAAAGGTGGCATAATCATCTTAATCCTACCATAAATAAGGAAGCATGGACTCAGGAAGAGGAGTTGGCTCTCATACGTGCGCATCAGATTTATGGGAACAAATGGGCAGAATTAGCGAAGATATTACCTGGAAGGACAGACAATGCTATAAAAAACCATTGGAACAGTTCCGTAAAAAAGAAATTGGATTCTTACTTGGCATCAGGCTTGCTTACTCAGTTACAAAATGTACCGCTTGCTGGAAATCCGAATCAACCTATTGCTTCTGTCTCTTCGAGGTTGCAGCAGAGTGGAGAAGATAATGGTCCAAGGGGTACTGAAGGAGAGGAAGTTTCACAGTGTAGCCAGGAGTCGGCTAATGCCGGTTACTTTTCATCAGCCAGAGATATGAACAGTGTTGCTTTACGCACTGGAGAGGAATACAGGCCAAATGAAGAGCCTAGTCAAGCATCCTGTTCAGAGCCATATTACGTGTGTCTGGATGAAGCAACTGTATCCCTTCCAGACATGGCTGACCAAGAGATTTGCGTTGAACAGAAATATTCACACAACCCTGGAAATTCCAATAACGGGGAAGGCCAACTTGATTTAATTGACTTGACCAATATTTCCTCACTGGACTTTGGGCAGGAATCATCACAGTTCCAAAATGATTGCATGATGAATGTTCCGTTTCAGACTTCGGTGGGGTTAGGTGTCGCAACAACCATGCAACCGACATCTATAGACTCTGTTAAACCCGAACACATGTTGATGTCAGACGATGAATGTTGCAGAATCCTATTTTCAGAAGCAATAAGCGATGAATGTTTTTCTTCTGAAGATTATAATAAATGTGTAAATATGGTTGATTTATTAGGAGGCCCCTCATTTCTTTGTCAGTCATCATTACCATCTGTCCCCTCAGTTGTTTCTTCTACTGGAGATAGGTTGATGTATACGGCCGAAGCCAATCAGTTGGTTGGGTCTGAGGATCAGCAGTTTGTCTCCAGAACGCAGGATAACATAATTTATGCCAGTGACTTGTCCAGTCCTCCTTGTATCCGTAGGATAGACAACACTGAAATGCAAGAGCCATCGGACGTTGTCAAAGATGATTCAAAATTGGTCCCTGTAAATAGTTTTGGCTGTGGATCAGATGCAAAGTCAACTTCATATGTGCATACAGAACAGGACACAGGTGCTCTATGTTATGAACCTCCCCGCTTCCCAAGCTTGGACATTCCTTTCTTAAGCTGTGATCTTATACAGTCAGGGGGCGATATGCAGCAAGAATTCAGTCCCCTTGGTATTCGCCAATTTATGATGTCTTCTATGAACTGTCTAACTCCTTTTAGATTATGGGACTCTCCTTCTCGGGATGATAGCCCAGATGCTTTGTTAAAAAGTGCAGCTAAAACGTTCACAAGTACACCATCTATATTAAAGAAACGAAACCGAGATCTCTTATCTCCATTGTCGGATAAAAGAATAGACAAGAAACTTGAGATTGAAATGACATCAACCTTGATAAAAAACTTTTCCCGATTGGATGTCATGTTTGATGACAACGAGGCTCAGGGAGCAGATTTGATTCCTTCATCTTCAATGCCGAAAAGGGACTCTGGTACCTCTGTTGAAGATGATAAAGAGAATTGTGGACAAGCTGTTAAAGTGGAATCAGTAGGGGAAAAAAATAAGAATGCTATCTTGGACGACAAAAAATCTGAAAAAGATTCAGGTGATGGTAGTTCTCGGGAAAAAATTAAGCAGCAACCTGTTTCTGTTGATTCTGCGATCGAAAATGATGGTAGCGCTGCCGAGGAGATTGTCCAACAACCGTCTGGAGTTTTGGTTGAGCATGATGTGAATGACCTATTAATGCATTCACCAGATCAAGTAAATTTGAAATCAGAAAGAGTTCTTAGTTTAAGTGCGAGATCTAAAAAAAATCCATGCTCAAGGATTAATTCACCATCTGTTTGGTTAAAGGAGCATGAAAGACTTTCAGTTGCCGTTACTTGTATACATTCTGTCAGTTCATCAGGCCCGGGGGAGAATTCGGGTGATCACACTGGAAATGATGGTGGTCTGGAAACATGTAGCATATTTGGTGGAACACCATTTAGGAAAAGCATTGAGTCGCCTTCAGCATGGAAATCTCCTTGGTTCATCAACACTTTTTTGTCCAGCCCCAGGATTGATACTGAAATTACAATTGAGGATTTTGGGTACTTTATGAGCCCTGGTGACAGAAGCTATGATGCAATCGGGTTGATGAAACAGATCAATGAACAGACTGCTGCTCAGTATGCCAGTGCTCATGAGATCTTAGGAAATGAAACTCCTAAGGCGTTACCTAAAGGTAAGTCCAGAAACGATGGGGATGAAGACCGAGAAGATATCGATCCTAATAATAAGCGTGGGGACTGTTCTCAGTCGGCTTCAAGTGCCTTGGTGGAACGACGTGTGCTTGACTTTAGTGAATGTGGATCTCCGGTCAAAGGTGATAGCAGCAAATCCTCAGCTATGAGCTTCTCAAGCCCAACTTCGTATTTGTTGAAGGGCTGTAGATAA 2937 0.4276 MERERTIPAVDGVTDGVQKIRALHGRTTGPTRRSTKGQWTPEEDETLRKAVQRFKGKNWKKIAECFKDRTDVQCLHRWQKVLNPELVKGPWSKEEDEIIIDLVNRYGPKKWSTIAQKLPGRIGKQCRERWHNHLNPTINKEAWTQEEELALIRAHQIYGNKWAELAKILPGRTDNAIKNHWNSSVKKKLDSYLASGLLTQLQNVPLAGNPNQPIASVSSRLQQSGEDNGPRGTEGEEVSQCSQESANAGYFSSARDMNSVALRTGEEYRPNEEPSQASCSEPYYVCLDEATVSLPDMADQEICVEQKYSHNPGNSNNGEGQLDLIDLTNISSLDFGQESSQFQNDCMMNVPFQTSVGLGVATTMQPTSIDSVKPEHMLMSDDECCRILFSEAISDECFSSEDYNKCVNMVDLLGGPSFLCQSSLPSVPSVVSSTGDRLMYTAEANQLVGSEDQQFVSRTQDNIIYASDLSSPPCIRRIDNTEMQEPSDVVKDDSKLVPVNSFGCGSDAKSTSYVHTEQDTGALCYEPPRFPSLDIPFLSCDLIQSGGDMQQEFSPLGIRQFMMSSMNCLTPFRLWDSPSRDDSPDALLKSAAKTFTSTPSILKKRNRDLLSPLSDKRIDKKLEIEMTSTLIKNFSRLDVMFDDNEAQGADLIPSSSMPKRDSGTSVEDDKENCGQAVKVESVGEKNKNAILDDKKSEKDSGDGSSREKIKQQPVSVDSAIENDGSAAEEIVQQPSGVLVEHDVNDLLMHSPDQVNLKSERVLSLSARSKKNPCSRINSPSVWLKEHERLSVAVTCIHSVSSSGPGENSGDHTGNDGGLETCSIFGGTPFRKSIESPSAWKSPWFINTFLSSPRIDTEITIEDFGYFMSPGDRSYDAIGLMKQINEQTAAQYASAHEILGNETPKALPKGKSRNDGDEDREDIDPNNKRGDCSQSASSALVERRVLDFSECGSPVKGDSSKSSAMSFSSPTSYLLKGCR* 979
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1060 978 MobiDBLite consensus disorder prediction 907 927 - -
Vra5g1060 978 PANTHER MYB PROTEIN-RELATED 529 977 - -
Vra5g1060 978 PANTHER MYB PROTEIN-RELATED 11 441 - -
Vra5g1060 978 PANTHER TRANSCRIPTION REPRESSOR MYB5 529 977 - -
Vra5g1060 978 PANTHER TRANSCRIPTION REPRESSOR MYB5 11 441 - -
Vra5g1060 978 ProSiteProfiles Myb-like domain profile. 83 134 IPR001005 -
Vra5g1060 978 Gene3D - 88 139 - -
Vra5g1060 978 MobiDBLite consensus disorder prediction 648 718 - -
Vra5g1060 978 MobiDBLite consensus disorder prediction 954 972 - -
Vra5g1060 978 CDD SANT 39 82 IPR001005 -
Vra5g1060 978 SMART sant 139 187 IPR001005 -
Vra5g1060 978 SMART sant 87 136 IPR001005 -
Vra5g1060 978 SMART sant 35 84 IPR001005 -
Vra5g1060 978 MobiDBLite consensus disorder prediction 685 706 - -
Vra5g1060 978 SUPERFAMILY Homeodomain-like 85 181 IPR009057 -
Vra5g1060 978 MobiDBLite consensus disorder prediction 209 247 - -
Vra5g1060 978 CDD SANT 90 134 IPR001005 -
Vra5g1060 978 Gene3D - 35 87 - -
Vra5g1060 978 ProSiteProfiles Myb-like domain profile. 31 82 IPR001005 -
Vra5g1060 978 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 31 82 IPR017930 -
Vra5g1060 978 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 83 138 IPR017930 -
Vra5g1060 978 ProSiteProfiles Myb-like domain profile. 135 185 IPR001005 -
Vra5g1060 978 CDD SANT 142 182 IPR001005 -
Vra5g1060 978 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 139 189 IPR017930 -
Vra5g1060 978 Pfam Myb-like DNA-binding domain 88 134 IPR001005 -
Vra5g1060 978 Pfam Myb-like DNA-binding domain 140 182 IPR001005 -
Vra5g1060 978 Pfam Myb-like DNA-binding domain 36 82 IPR001005 -
Vra5g1060 978 Gene3D - 141 201 - -
Vra5g1060 978 SUPERFAMILY Homeodomain-like 32 88 IPR009057 -
Vra5g1060 978 MobiDBLite consensus disorder prediction 949 978 - -
Vra5g1060 978 MobiDBLite consensus disorder prediction 898 937 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1060 Vra-Chr5 16984845 16992739 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g1060 20 978 MYB Transcription Factor Family AT4G32730 44.089 0.0 720
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vra5g1060 Myb_DNA-binding 4.1e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1060 - K09420 pvu:PHAVU_009G106700g 1806.96
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g1060 5 16984845 16992739 Vra5g1060 5 16984845 16992739 ECH