Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1051 ATGGAACCGAGGGAAACGATGTCGGATTCAATTCCGCAGAAATTGGCCAGAGAATTAGATTTTACCGTCGTTTGCAGAGATAATCCGCACCTGAAACTGCCTCCTCCGTCACCACCACCGCCGCATTCACTTCTGCCGCTCTCATCGCATCTTCCGTTGCAGTTAAATTTGCAGACACCGGGGCAACGGCCATGGTTATGTTCGGAGCCACAGGAGCAACAGCCCTGGCTACATTCACCGGGATCAAAGCTAGTTTTGCCGGTTCGTCAATTTCCGCAGCCGGTGCAGAATCTTCCAGTTAAGGTGTTGCCAGTGGTGAAGTCAGAGTCTCCTATATCACAACCTCGAATTAATGTGGAATTAAAGGACACGACACCAAAGAAACAGAAACAATGTAACTGCAAAAATTCTAGATGCCTCAAATTGTACTGTGAGTGTTTTGCAGCTGGGATCTATTGTGATGGTTGCAACTGTGTAAATTGTCACAATAATGTGGATAATGAGGCTGCCAGACAGGAGGCAGTTGGAATAACATTGGAAAGAAACCCAAATGCTTTCAGACCAAAAATTGCTAGCAGTCCGCAAGAACAACGAAATTTCAAGGAAAGTGAAGCTCAAGTTATAGGAAAGCACAATAAAGGATGTCACTGCAAGAAATCTGGTTGCCTTAAGAAGTATTGTGAGTGCTTCCAAGCCAATATCCTCTGCTCTGAAAATTGTAAATGCATGGACTGCAAGAATTTTGAAGGAAGTACGGAAAGAAGAGCAATTTTTCACAGAGAGTATAATCTAGTTCACATCGAACAGGGAATTAATGTTGCTGTAACCGAAGTCCTTGGATCATCTGGCTATAGAAACCCTATAACACCGAAGAGGAGAAAAATTCAAGAAACGTTTTCTGGAAAGTTAGCTGTGGATCAAACTGTTAACACAACTGCCCAATACCTACAGGAAACTGATCGAATGGCTTCCTCATCTTCAAATCTGTCATATTCCTTTGTTTCTGACCATGTCAACACAAGAATTTCAGGGTTTTCAAGGTCTATGTACCGGTCGGTATTGGCAGATGTCCTCCAGCCACAAAATGTGAAGAATCTCTGCTCACTTTTTGTTATTCTCTCACGAGTATCTGCAAAGATTGATGCAGAAACGGAAGGGAAAATAGATCGACAAACAAAAGCTGGGAACTCTAAAGCTTCCGTTGCTTCATCAGCTAAATCGCTACAGCAAACTAAAGATGGTCGCCAGCCCGTTTGTGATGGTCACGTGAATAAAGCTGTGGCAGATGCAGTTGATATTGCAAATTATAATAGGCCATTGTCACCAGAAACACTGGCATTGATGTGTGATGAACAGGCCAACATGTTTTTTGGAAATACTTCTGCCGATGGAGCTGCATATCAAAACATGATTCAAAAGTCATTAAATTCTGATGGAAGCTCTGATGCTGCTTACGGAGAGCAGGAAAGGCTTATAATGACCAAACTCTTGGATGTTCTTCGCGAACTCGTTACTCTTGGTAGCATAAAAGAAACGTGCTATTATTCGTCGACCAAGAAAGAACCCGCAGACCACGGCAATATTGGGGCTGAAACTGGCGTTGGAAGTGAAAAGAGAAATAGTAGCAATTGCATTGCAAATTACCCCATCCCATCGGTTACTAAAATATCCCAAACATTTATGCCATAA 1689 0.4281 MEPRETMSDSIPQKLARELDFTVVCRDNPHLKLPPPSPPPPHSLLPLSSHLPLQLNLQTPGQRPWLCSEPQEQQPWLHSPGSKLVLPVRQFPQPVQNLPVKVLPVVKSESPISQPRINVELKDTTPKKQKQCNCKNSRCLKLYCECFAAGIYCDGCNCVNCHNNVDNEAARQEAVGITLERNPNAFRPKIASSPQEQRNFKESEAQVIGKHNKGCHCKKSGCLKKYCECFQANILCSENCKCMDCKNFEGSTERRAIFHREYNLVHIEQGINVAVTEVLGSSGYRNPITPKRRKIQETFSGKLAVDQTVNTTAQYLQETDRMASSSSNLSYSFVSDHVNTRISGFSRSMYRSVLADVLQPQNVKNLCSLFVILSRVSAKIDAETEGKIDRQTKAGNSKASVASSAKSLQQTKDGRQPVCDGHVNKAVADAVDIANYNRPLSPETLALMCDEQANMFFGNTSADGAAYQNMIQKSLNSDGSSDAAYGEQERLIMTKLLDVLRELVTLGSIKETCYYSSTKKEPADHGNIGAETGVGSEKRNSSNCIANYPIPSVTKISQTFMP* 563
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1051 562 MobiDBLite consensus disorder prediction 390 416 - -
Vra5g1051 562 SMART CXC_2 210 251 IPR033467 -
Vra5g1051 562 SMART CXC_2 127 167 IPR033467 -
Vra5g1051 562 ProSiteProfiles CRC domain profile. 128 250 IPR005172 -
Vra5g1051 562 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 129 164 IPR005172 -
Vra5g1051 562 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 213 247 IPR005172 -
Vra5g1051 562 PANTHER TESMIN/TSO1-RELATED 1 535 IPR028307 -
Vra5g1051 562 MobiDBLite consensus disorder prediction 393 414 - -
Vra5g1051 562 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 5 ISOFORM X1 1 535 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1051 Vra-Chr5 16899997 16904914 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g1051 109 512 CPP Transcription Factor Family AT4G29000 49.412 4.18e-120 365
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CPP Vra5g1051 TCR 3e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1051 - K21776 gmx:100811459 765.763
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g1051 5 16899997 16904914 Vra5g1051 5 16899997 16904914 ECH