Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1040 ATGGACAGGGTCATCGGCGGCAAGTTTAAGACTGGTCGGAAAATCGGAAGCGGTTCATTTGGAGAAATTTATATAGCCTCAAATATGGACACCTCGGAGATTGTTGCCATCAAGATGGAAAACAAGAGAACCAAACATCCACAACTATTGTATGAGGCAAAGTTATATAGCATTCTTCAAGGAGGAAGTGGTGTTCCATGTATGAAGTGGTGCGGTACTGATGGAGACAATAATGTTTTAGTTATTGATCTTCTGGGACGGAGTCTTGAAGACTTTTTTGTCTATTGCGGGAGGAAATTTTCATTAAAAACAGTTTTGATGTTGGCTGATCAGATGCTGACAAGAATAGAGTACCTGCATTCCAAGGGATTTTTGCATAGAGATATCAAACCAGATAATTTTCTCATGGGTCTTGGGAAGAAAGCAAATCAGGTTTATATTATTGATTTCGGACTAGCAAAAAGATATAGGGATCCAAACACAAATAAGCACATTCCTTACAGAGAGAATAAAAGCTTAACAGGAACTGCCCGTTATGCAAGTTGCAACACTCACATGGGAATTGAACAAAGTCGCCGTGATGATTTGGAGTCTCTTGGCTATGTTCTAATGTACTTTTTAAGAGGAAGCCTTCCTTGGCAGGGTTTGAAAGCTGCCACCAAAAAGGAAAAATATGACACTATCTGTGACAAGAAGTTATCGACTCCCATTGAGGTGCTCTGCAAGTCATTTCCTGTGGAGTTTGCTACATACTTTCATTATTGCCAATCTTTGACATTTGATCAACACCCAGATTATGGATACTTGAAGCGCCTGTTTAGTGATTTGTTCAGACGAGAAGGATATGATTCCGACTATATATATGACTGGACCATCCTCAAATACCAGCAGTCTCAACAGACAAAGAAACAAAATCAATCATCTTCTTCAGCTGCATTGCCTAGCAATCTAGAACCAGCAGTTGTGGAAAACCCCAAAGGAGCCAATGATTCAACTCATGTTAATGTAACAAATATGTTAGCTAGTCTTGAACTCCCAAGTGCACGTGCGCAGCCTAAGCCATCTAATGCTCGGAATCTGGATGCCAAGATTCGGACTGAGAAACATGGTGTGAACAATATTCCACCTAGTTCCTCTGCCTTGCCCAAATCCTCTACAGGAAATGTCTCGAAACCAGAAAAGTCCACAGGAACCTCAAACCTTGGTCGTGTATTTGGGAGTAATTCCCGTGTTTCAAGCAGCTGGATTCCTTCACTACGCCGAATTTCTTCCGCCAAATAG 1281 0.4122 MDRVIGGKFKTGRKIGSGSFGEIYIASNMDTSEIVAIKMENKRTKHPQLLYEAKLYSILQGGSGVPCMKWCGTDGDNNVLVIDLLGRSLEDFFVYCGRKFSLKTVLMLADQMLTRIEYLHSKGFLHRDIKPDNFLMGLGKKANQVYIIDFGLAKRYRDPNTNKHIPYRENKSLTGTARYASCNTHMGIEQSRRDDLESLGYVLMYFLRGSLPWQGLKAATKKEKYDTICDKKLSTPIEVLCKSFPVEFATYFHYCQSLTFDQHPDYGYLKRLFSDLFRREGYDSDYIYDWTILKYQQSQQTKKQNQSSSSAALPSNLEPAVVENPKGANDSTHVNVTNMLASLELPSARAQPKPSNARNLDAKIRTEKHGVNNIPPSSSALPKSSTGNVSKPEKSTGTSNLGRVFGSNSRVSSSWIPSLRRISSAK* 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1040 426 ProSitePatterns Protein kinases ATP-binding region signature. 15 38 IPR017441 GO:0005524
Vra5g1040 426 SMART serkin_6 9 287 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra5g1040 426 PANTHER CASEIN KINASE I-LIKE PROTEIN 1 411 - -
Vra5g1040 426 MobiDBLite consensus disorder prediction 371 426 - -
Vra5g1040 426 ProSitePatterns Serine/Threonine protein kinases active-site signature. 124 136 IPR008271 GO:0004672|GO:0006468
Vra5g1040 426 ProSiteProfiles Protein kinase domain profile. 9 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra5g1040 426 Gene3D Transferase(Phosphotransferase) domain 1 1 337 - -
Vra5g1040 426 SUPERFAMILY Protein kinase-like (PK-like) 4 290 IPR011009 -
Vra5g1040 426 PANTHER CASEIN KINASE-RELATED 1 411 - -
Vra5g1040 426 Pfam Protein kinase domain 9 222 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra5g1040 426 MobiDBLite consensus disorder prediction 365 426 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1040 Vra-Chr5 16787962 16796070 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g1040 9 236 AGC Kinase Gene Family AT3G08720 26.724 1.77e-15 76.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1 Vra5g1040 Pkinase 3.2e-29 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1040 K08960 K08959 gmx:100792736 761.14
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g1040 5 16787962 16796070 Vra6g1150 6 18552875 18591651 PCT