Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1038 ATGGCATCATCCTTAATGTTACCAGCTGCTTCAATGCTGAGACCATCTGCCACTTCATCCTCTACTTCACGAAGACTTGCTCTCTTTCACCTTGTCACCACTGGTGCTATTGCTCTCCCACAATGTAAGCTGTTTGGTGCAAAAGGATCAGATTTGTTAAAAGTAGCAGAGGCTACTGCTGCGGAAAATATAGTCCAGCCAGATAAATTTTTGTTTGATTGGGTTAAGAATGACAACAGAAGATTTCTCCATGTTGTGTACCGTATTGGGGACTTGGAGAAGACTATAAAGTTCTACACTGAATGCCTTGCCATGAAGCTTTTGAGGAAACGTGATATACCTGAAGATAGATATTCTAACGCTTTTCTTGGATATGGGCCCGAAGATTCTAATTTTACAGTTGAACTTACTTACAATTATGGAGTGGATAACTATGACATTGGAAGTGGCTTTGGTCATTTTGGTGTTGCAGTTGAAGATATTTACAAGAGGGTAGATCTAATAAAGGCAAAAGGAGGAAAGGTTACAAGGGAACCAGGGCCTGTTAGAGATGGCAGTTCGGTAATTGCTTTCATTGAAGATCCTGATGGTTATAAGTTTGAACTTTTGGAGAGAAGACCTACATCTGAACCTCTATGCCAAGTGATGCTTCGTGTTGGCGATCTCGATCGTGCCATAGCCTTCTACCAAAAAGCTGTCGGAATGAAACTTCTCCGCAAGAAGGACAATCCTGAGGACAAGTACACTGTAGCCTTTTTGGGCTATGGTCCTGAAGATAAGAATACTGTTCTAGAACTAACATATAACTATGGCGTTACTGATTACGACAAAGGAAATGGTTACGCTCAGATTGCAATAGGCACAAATGATGTCTATAAGACTGCAGAAGCAATCAAATTATGTGGGGGGAAGATTATCCGTGAACCGGGGCCCTTGCCTGGTATCAACACCAAGATTGTAGCTTGTTTGGACCCTGATGGCTGGAAATTGGTATTTGTTGATAATGTCGATTTTCTGAAGGAATTAGAGTGA 1032 0.4147 MASSLMLPAASMLRPSATSSSTSRRLALFHLVTTGAIALPQCKLFGAKGSDLLKVAEATAAENIVQPDKFLFDWVKNDNRRFLHVVYRIGDLEKTIKFYTECLAMKLLRKRDIPEDRYSNAFLGYGPEDSNFTVELTYNYGVDNYDIGSGFGHFGVAVEDIYKRVDLIKAKGGKVTREPGPVRDGSSVIAFIEDPDGYKFELLERRPTSEPLCQVMLRVGDLDRAIAFYQKAVGMKLLRKKDNPEDKYTVAFLGYGPEDKNTVLELTYNYGVTDYDKGNGYAQIAIGTNDVYKTAEAIKLCGGKIIREPGPLPGINTKIVACLDPDGWKLVFVDNVDFLKELE* 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1038 343 CDD GlxI_Ni 83 203 - -
Vra5g1038 343 TIGRFAM glyox_I: lactoylglutathione lyase 71 214 IPR004361 GO:0004462|GO:0046872
Vra5g1038 343 TIGRFAM glyox_I: lactoylglutathione lyase 212 336 IPR004361 GO:0004462|GO:0046872
Vra5g1038 343 ProSiteProfiles Vicinal oxygen chelate (VOC) domain profile. 211 335 IPR037523 -
Vra5g1038 343 SUPERFAMILY Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 80 207 IPR029068 -
Vra5g1038 343 Gene3D - 208 343 IPR029068 -
Vra5g1038 343 PANTHER LACTOYLGLUTATHIONE LYASE CHLOROPLASTIC-RELATED 18 343 - -
Vra5g1038 343 CDD GlxI_Ni 212 333 - -
Vra5g1038 343 Pfam Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 214 331 IPR004360 -
Vra5g1038 343 Pfam Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 82 202 IPR004360 -
Vra5g1038 343 ProSiteProfiles Vicinal oxygen chelate (VOC) domain profile. 81 205 IPR037523 -
Vra5g1038 343 PANTHER LACTOYLGLUTATHIONE LYASE 18 343 - -
Vra5g1038 343 Gene3D - 54 206 IPR029068 -
Vra5g1038 343 SUPERFAMILY Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 212 335 IPR029068 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1038 Vra-Chr5 16780081 16783392 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g1038 212 334 Calmodulin-binding Proteins AT1G08110 27.027 2.17e-10 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1038 K01759 - gmx:100810908 629.402
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g1038 5 16780081 16783392 Vra5g1038 5 16780081 16783392 ECH